Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12400

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,357,800	+				-1.4
2,357,803	+				-1.2
2,357,807	+				-2.6
2,357,810	+				-0.9
2,357,907	-		LU632_RS12400	0.25	-0.1
2,358,026	+		LU632_RS12400	0.56	+0.4
2,358,269	+		LU632_RS12405	0.17	+0.1
2,358,372	+		LU632_RS12405	0.41	+0.3
2,358,372	+		LU632_RS12405	0.41	-1.9
2,358,372	+		LU632_RS12405	0.41	+0.5
2,358,373	-		LU632_RS12405	0.41	-0.6
2,358,405	-		LU632_RS12405	0.49	-1.2
2,358,509	+		LU632_RS12405	0.73	+0.2
2,358,538	-		LU632_RS12405	0.80	-0.6
2,358,587	+				-1.2
2,358,593	+				+0.0
2,358,593	+				+1.1
2,358,594	-				+0.7
2,358,594	-				-0.2
2,358,594	-				-0.3
2,358,594	-				-0.5
2,358,594	-				-0.3
2,358,594	-				-0.0
2,358,653	+		LU632_RS12410	0.20	+1.1
2,358,654	-		LU632_RS12410	0.20	+0.7
2,358,686	-		LU632_RS12410	0.36	-0.3
2,358,730	-		LU632_RS12410	0.58	-0.5
2,358,760	+		LU632_RS12410	0.73	-0.1
2,358,760	+		LU632_RS12410	0.73	-1.3
2,358,797	+				-1.6
2,358,797	+				-0.5
2,358,798	-				-0.1
2,358,798	-				-4.5
2,358,798	-				-0.3
2,358,798	-				+0.4
2,358,802	+				+0.5
2,358,803	-				+0.9
2,358,956	-		LU632_RS12415	0.23	-1.5
2,359,004	+		LU632_RS12415	0.30	+0.1
2,359,005	-		LU632_RS12415	0.30	-0.9
2,359,005	-		LU632_RS12415	0.30	+0.5
2,359,005	-		LU632_RS12415	0.30	-1.0
2,359,115	-		LU632_RS12415	0.47	+1.1
2,359,134	+		LU632_RS12415	0.50	+0.2
2,359,138	+		LU632_RS12415	0.51	-0.2
2,359,160	+		LU632_RS12415	0.54	+0.4
2,359,160	+		LU632_RS12415	0.54	+1.8
2,359,160	+		LU632_RS12415	0.54	-0.6
2,359,160	+		LU632_RS12415	0.54	-0.5
2,359,160	+		LU632_RS12415	0.54	-1.9
2,359,160	+		LU632_RS12415	0.54	-1.5
2,359,160	+		LU632_RS12415	0.54	-0.1
2,359,160	+		LU632_RS12415	0.54	-0.2