Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12230

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,321,015	-		LU632_RS12225	0.40	-0.2
2,321,106	+		LU632_RS12225	0.45	-0.7
2,321,171	+		LU632_RS12225	0.50	-1.5
2,321,174	-		LU632_RS12225	0.50	-1.9
2,321,174	-		LU632_RS12225	0.50	+1.7
2,321,182	-		LU632_RS12225	0.50	+0.3
2,321,187	-		LU632_RS12225	0.51	-1.7
2,321,187	-		LU632_RS12225	0.51	+1.6
2,321,187	-		LU632_RS12225	0.51	+0.5
2,321,190	+		LU632_RS12225	0.51	-0.2
2,321,269	+		LU632_RS12225	0.56	-0.1
2,321,269	+		LU632_RS12225	0.56	-2.1
2,321,270	-		LU632_RS12225	0.56	+1.2
2,321,270	-		LU632_RS12225	0.56	-0.7
2,321,287	-		LU632_RS12225	0.57	-0.8
2,321,290	-		LU632_RS12225	0.57	-1.7
2,321,290	-		LU632_RS12225	0.57	-1.3
2,321,291	+		LU632_RS12225	0.57	-1.8
2,321,292	-		LU632_RS12225	0.57	+1.8
2,321,292	-		LU632_RS12225	0.57	+2.5
2,321,295	+		LU632_RS12225	0.58	+0.2
2,321,376	-		LU632_RS12225	0.63	-0.1
2,321,480	+		LU632_RS12225	0.70	-1.1
2,321,480	+		LU632_RS12225	0.70	-0.1
2,321,481	-		LU632_RS12225	0.70	-1.7
2,321,481	-		LU632_RS12225	0.70	+0.2
2,321,528	+		LU632_RS12225	0.73	-0.9
2,321,529	-		LU632_RS12225	0.73	-0.5
2,321,529	-		LU632_RS12225	0.73	+0.5
2,321,559	-		LU632_RS12225	0.75	+0.4
2,321,599	-		LU632_RS12225	0.77	+0.5
2,321,709	-		LU632_RS12225	0.84	-2.7
2,321,726	-		LU632_RS12225	0.86	-1.8
2,321,731	-		LU632_RS12225	0.86	-1.1
2,321,751	-		LU632_RS12225	0.87	+1.7
2,321,775	-		LU632_RS12225	0.89	-0.3
2,321,775	-		LU632_RS12225	0.89	+2.7
2,321,836	-				+0.6
2,321,857	+				+0.4
2,321,857	+				+0.2
2,321,858	-				-1.1
2,321,867	+				-1.5
2,321,867	+				-0.2
2,321,868	-				+0.6
2,321,868	-				+8.4
2,321,868	-				-1.5
2,321,870	+				-1.9
2,322,095	+	ascB	LU632_RS12230	0.10	-1.2
2,322,116	+	ascB	LU632_RS12230	0.12	-1.2
2,322,158	+	ascB	LU632_RS12230	0.15	-1.5
2,322,160	+	ascB	LU632_RS12230	0.15	-0.5
2,322,160	+	ascB	LU632_RS12230	0.15	-0.1
2,322,300	+	ascB	LU632_RS12230	0.25	-1.0
2,322,364	-	ascB	LU632_RS12230	0.30	+0.9
2,322,408	+	ascB	LU632_RS12230	0.33	+0.1
2,322,409	-	ascB	LU632_RS12230	0.33	+3.1
2,322,477	-	ascB	LU632_RS12230	0.38	-0.5
2,322,477	-	ascB	LU632_RS12230	0.38	-0.9
2,322,496	+	ascB	LU632_RS12230	0.39	-1.9
2,322,522	-	ascB	LU632_RS12230	0.41	+0.4
2,322,522	-	ascB	LU632_RS12230	0.41	+0.3
2,322,522	-	ascB	LU632_RS12230	0.41	+0.2
2,322,626	+	ascB	LU632_RS12230	0.48	-1.1
2,322,626	+	ascB	LU632_RS12230	0.48	-1.0
2,322,626	+	ascB	LU632_RS12230	0.48	-0.5
2,322,626	+	ascB	LU632_RS12230	0.48	+2.7
2,322,626	+	ascB	LU632_RS12230	0.48	-0.9
2,322,627	-	ascB	LU632_RS12230	0.48	+1.1
2,322,627	-	ascB	LU632_RS12230	0.48	-0.6
2,322,627	-	ascB	LU632_RS12230	0.48	-0.6
2,322,627	-	ascB	LU632_RS12230	0.48	+1.9
2,322,649	-	ascB	LU632_RS12230	0.50	-0.4
2,322,662	+	ascB	LU632_RS12230	0.51	+1.5
2,322,751	-	ascB	LU632_RS12230	0.57	-0.1
2,322,752	+	ascB	LU632_RS12230	0.57	-0.4
2,322,753	-	ascB	LU632_RS12230	0.57	-1.1
2,322,753	-	ascB	LU632_RS12230	0.57	-3.2
2,322,753	-	ascB	LU632_RS12230	0.57	-0.7
2,322,781	+	ascB	LU632_RS12230	0.59	-0.1
2,322,781	+	ascB	LU632_RS12230	0.59	+0.5
2,322,782	-	ascB	LU632_RS12230	0.60	-0.1
2,322,782	-	ascB	LU632_RS12230	0.60	+0.5
2,322,853	-	ascB	LU632_RS12230	0.65	-0.3
2,322,914	+	ascB	LU632_RS12230	0.69	-1.1
2,322,915	-	ascB	LU632_RS12230	0.69	-1.5
2,322,923	+	ascB	LU632_RS12230	0.70	-1.1
2,323,000	-	ascB	LU632_RS12230	0.75	-0.3
2,323,079	+	ascB	LU632_RS12230	0.81	-0.3
2,323,166	+	ascB	LU632_RS12230	0.87	-0.1
2,323,166	+	ascB	LU632_RS12230	0.87	-0.2
2,323,166	+	ascB	LU632_RS12230	0.87	-0.0
2,323,166	+	ascB	LU632_RS12230	0.87	-1.3
2,323,166	+	ascB	LU632_RS12230	0.87	-0.8
2,323,167	-	ascB	LU632_RS12230	0.87	-0.9
2,323,236	+				-0.8
2,323,236	+				+0.7
2,323,236	+				+0.4
2,323,237	-				-0.3
2,323,284	-				+0.2
2,323,361	-				-0.5
2,323,361	-				+1.7
2,323,379	+				-0.4
2,323,380	-				-0.3
2,323,453	+				-1.3