Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11935

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,258,220	-		LU632_RS11925	0.35	+0.6
2,258,249	+		LU632_RS11925	0.45	-1.3
2,258,250	-		LU632_RS11925	0.45	+0.4
2,258,317	-		LU632_RS11925	0.69	+0.1
2,258,317	-		LU632_RS11925	0.69	+0.4
2,258,646	+		LU632_RS11935	0.16	-1.7
2,258,646	+		LU632_RS11935	0.16	+0.8
2,258,647	-		LU632_RS11935	0.16	+1.4
2,258,647	-		LU632_RS11935	0.16	-0.9
2,258,647	-		LU632_RS11935	0.16	+0.5
2,258,647	-		LU632_RS11935	0.16	-1.2
2,258,665	-		LU632_RS11935	0.22	-0.9
2,258,748	+		LU632_RS11935	0.50	-0.2
2,258,748	+		LU632_RS11935	0.50	+2.1
2,258,749	-		LU632_RS11935	0.50	-0.5
2,258,749	-		LU632_RS11935	0.50	+0.5
2,258,847	-		LU632_RS11935	0.83	+4.8
2,258,847	-		LU632_RS11935	0.83	-0.1
2,258,848	+		LU632_RS11935	0.83	+0.7
2,258,848	+		LU632_RS11935	0.83	+0.4
2,258,848	+		LU632_RS11935	0.83	+2.1
2,258,849	-		LU632_RS11935	0.83	-0.6
2,258,927	-				+1.5
2,258,927	-				+0.6
2,258,927	-				-0.3
2,258,930	-				+0.7
2,258,950	+				-2.7
2,258,964	-				+0.8
2,259,056	-				-0.9
2,259,198	+		LU632_RS11940	0.17	+0.3
2,259,201	+		LU632_RS11940	0.17	-0.1
2,259,331	+		LU632_RS11940	0.28	+0.3
2,259,331	+		LU632_RS11940	0.28	-0.5
2,259,332	-		LU632_RS11940	0.28	-0.8
2,259,365	-		LU632_RS11940	0.30	-0.4
2,259,602	+		LU632_RS11940	0.49	-1.7
2,259,621	+		LU632_RS11940	0.51	-1.3
2,259,665	+		LU632_RS11940	0.54	-1.1
2,259,757	+		LU632_RS11940	0.62	+0.7
2,259,758	-		LU632_RS11940	0.62	-1.6