Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11875

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,249,349	+				+1.6
2,249,350	-				+0.4
2,249,395	+				-0.2
2,249,396	-				+3.0
2,249,396	-				+1.1
2,249,396	-				-0.2
2,249,529	-				+0.3
2,249,634	+		LU632_RS11870	0.13	-1.6
2,249,708	+		LU632_RS11870	0.28	+4.2
2,249,708	+		LU632_RS11870	0.28	+2.7
2,249,754	+		LU632_RS11870	0.38	+0.2
2,249,755	-		LU632_RS11870	0.38	-0.9
2,249,790	+		LU632_RS11870	0.45	-0.4
2,249,790	+		LU632_RS11870	0.45	+1.4
2,249,790	+		LU632_RS11870	0.45	+0.5
2,249,791	-		LU632_RS11870	0.45	+0.7
2,249,796	-		LU632_RS11870	0.46	+3.8
2,249,845	-		LU632_RS11870	0.57	-1.0
2,249,846	+		LU632_RS11870	0.57	+3.2
2,249,937	-		LU632_RS11870	0.76	+0.6
2,249,991	+		LU632_RS11870	0.87	+0.7
2,249,992	-		LU632_RS11870	0.87	-0.3
2,249,997	+		LU632_RS11870	0.88	-1.5
2,249,997	+		LU632_RS11870	0.88	+0.8
2,250,039	-				-0.6
2,250,039	-				-0.8
2,250,167	+		LU632_RS11875	0.50	-0.0
2,250,167	+		LU632_RS11875	0.50	-1.3
2,250,167	+		LU632_RS11875	0.50	+2.4
2,250,202	+		LU632_RS11875	0.65	-0.1
2,250,209	+		LU632_RS11875	0.68	+1.6
2,250,215	+		LU632_RS11875	0.71	-0.9
2,250,237	-		LU632_RS11875	0.81	+1.4
2,250,239	+		LU632_RS11875	0.82	-0.2
2,250,332	+				-0.5
2,250,333	-				-0.4
2,250,726	-		LU632_RS11885	0.85	+0.4
2,250,756	-				-1.6
2,250,790	-		LU632_RS11890	0.13	-0.4
2,250,831	+		LU632_RS11890	0.34	-0.8
2,250,833	+		LU632_RS11890	0.35	-0.9
2,250,833	+		LU632_RS11890	0.35	+0.3
2,250,834	-		LU632_RS11890	0.35	+0.6
2,250,834	-		LU632_RS11890	0.35	-2.0
2,250,907	-		LU632_RS11890	0.72	-0.9
2,250,910	-		LU632_RS11890	0.73	+2.3
2,250,927	+		LU632_RS11890	0.82	+0.3
2,250,930	+		LU632_RS11890	0.83	-0.0
2,250,930	+		LU632_RS11890	0.83	+0.2
2,250,931	-		LU632_RS11890	0.84	+0.2
2,250,948	+				-1.0
2,251,004	+		LU632_RS11895	0.19	-1.7
2,251,103	+		LU632_RS11895	0.50	+0.5
2,251,142	-		LU632_RS11895	0.62	+0.8
2,251,166	-		LU632_RS11895	0.69	+0.3
2,251,166	-		LU632_RS11895	0.69	-1.7
2,251,209	-		LU632_RS11895	0.82	-0.3
2,251,219	+		LU632_RS11895	0.85	-0.2