Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11555

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,201,758	+				+0.5
2,201,804	+				+2.4
2,201,805	-				+1.4
2,201,880	+				-0.1
2,201,881	-				-0.9
2,201,881	-				+1.8
2,201,882	+				-0.1
2,201,882	+				+1.4
2,201,882	+				-1.0
2,201,882	+				-0.7
2,201,882	+				-0.5
2,201,882	+				-0.4
2,201,882	+				-0.2
2,201,883	-				+0.6
2,201,883	-				-1.1
2,201,883	-				-0.6
2,201,883	-				+0.8
2,201,883	-				-1.0
2,201,913	+				+1.7
2,201,914	-				-0.9
2,201,914	-				-1.6
2,201,962	+	pspD	LU632_RS11545	0.17	+0.5
2,201,963	-	pspD	LU632_RS11545	0.17	-1.1
2,202,060	+	pspD	LU632_RS11545	0.60	-0.6
2,202,060	+	pspD	LU632_RS11545	0.60	+2.7
2,202,060	+	pspD	LU632_RS11545	0.60	-1.5
2,202,061	-	pspD	LU632_RS11545	0.61	-0.5
2,202,061	-	pspD	LU632_RS11545	0.61	-0.2
2,202,064	+	pspD	LU632_RS11545	0.62	-2.5
2,202,065	-	pspD	LU632_RS11545	0.63	-1.6
2,202,065	-	pspD	LU632_RS11545	0.63	+0.8
2,202,198	-				+6.1
2,202,294	-	pspC	LU632_RS11550	0.28	+1.2
2,202,315	-	pspC	LU632_RS11550	0.34	-1.2
2,202,407	-	pspC	LU632_RS11550	0.60	-0.9
2,202,407	-	pspC	LU632_RS11550	0.60	+0.3
2,202,411	-	pspC	LU632_RS11550	0.61	+4.3
2,202,471	+	pspC	LU632_RS11550	0.78	-0.2
2,202,600	+	pspB	LU632_RS11555	0.25	+3.4
2,202,600	+	pspB	LU632_RS11555	0.25	-0.6
2,202,631	+	pspB	LU632_RS11555	0.38	+4.2
2,202,632	-	pspB	LU632_RS11555	0.39	-2.5
2,202,696	-	pspB	LU632_RS11555	0.67	-0.5
2,202,737	-	pspB	LU632_RS11555	0.85	+0.4
2,202,761	-				-0.9
2,202,761	-				+0.4
2,202,790	-				-0.5
2,202,811	+				+4.0
2,202,814	+				+0.7
2,202,814	+				-0.2
2,202,947	+	pspA	LU632_RS11560	0.20	+0.4
2,202,948	-	pspA	LU632_RS11560	0.20	-2.5
2,202,948	-	pspA	LU632_RS11560	0.20	-3.4
2,203,114	-	pspA	LU632_RS11560	0.45	-1.2
2,203,433	+				+0.7
2,203,434	-				-1.2
2,203,434	-				+0.6
2,203,578	-				+1.3