Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11270

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,154,603	+				+0.6
2,154,671	-	pdxY	LU632_RS11265	0.12	+0.1
2,154,702	+	pdxY	LU632_RS11265	0.15	+1.1
2,154,863	+	pdxY	LU632_RS11265	0.33	-1.0
2,154,930	-	pdxY	LU632_RS11265	0.41	-0.1
2,155,088	+	pdxY	LU632_RS11265	0.58	+0.4
2,155,253	+	pdxY	LU632_RS11265	0.76	+1.3
2,155,294	-	pdxY	LU632_RS11265	0.81	+1.1
2,155,314	+	pdxY	LU632_RS11265	0.83	-0.1
2,155,315	-	pdxY	LU632_RS11265	0.83	+0.7
2,155,343	-	pdxY	LU632_RS11265	0.86	-2.3
2,155,397	+				-0.4
2,155,420	+				+0.2
2,155,421	-				+0.3
2,155,436	+				-0.5
2,155,462	+				-0.4
2,155,496	+				-1.7
2,155,617	+		LU632_RS11270	0.10	+1.3
2,155,766	-		LU632_RS11270	0.48	-0.4
2,155,974	-				-1.5
2,155,994	+				-0.5
2,156,004	-				-1.8
2,156,029	-		LU632_RS11275	0.13	-0.8
2,156,029	-		LU632_RS11275	0.13	-1.0
2,156,029	-		LU632_RS11275	0.13	+0.5
2,156,030	+		LU632_RS11275	0.13	+1.1
2,156,031	-		LU632_RS11275	0.14	+2.9
2,156,103	+		LU632_RS11275	0.27	+0.5
2,156,234	+		LU632_RS11275	0.52	+1.1
2,156,236	+		LU632_RS11275	0.52	-1.3
2,156,236	+		LU632_RS11275	0.52	+0.5
2,156,287	+		LU632_RS11275	0.62	+0.1
2,156,298	+		LU632_RS11275	0.64	+0.8
2,156,298	+		LU632_RS11275	0.64	+2.4
2,156,298	+		LU632_RS11275	0.64	-0.4
2,156,298	+		LU632_RS11275	0.64	+0.4
2,156,298	+		LU632_RS11275	0.64	+0.9
2,156,298	+		LU632_RS11275	0.64	+0.5
2,156,298	+		LU632_RS11275	0.64	+0.7
2,156,298	+		LU632_RS11275	0.64	+0.3
2,156,299	-		LU632_RS11275	0.64	+1.6
2,156,299	-		LU632_RS11275	0.64	-1.1
2,156,299	-		LU632_RS11275	0.64	+0.7
2,156,299	-		LU632_RS11275	0.64	+3.5
2,156,302	+		LU632_RS11275	0.65	-2.0
2,156,391	-		LU632_RS11275	0.82	-0.5
2,156,402	+		LU632_RS11275	0.84	-0.9
2,156,438	+				+0.5
2,156,438	+				+0.3
2,156,439	-				-1.7
2,156,533	+				+0.5
2,156,600	+				+1.0
2,156,662	+	gstA	LU632_RS11280	0.11	+0.7
2,156,662	+	gstA	LU632_RS11280	0.11	-1.5
2,156,663	-	gstA	LU632_RS11280	0.11	+0.5
2,156,663	-	gstA	LU632_RS11280	0.11	+0.3
2,156,717	+	gstA	LU632_RS11280	0.20	-0.3