Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10540

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
2,012,861	+	fliP	LU632_RS10525	0.73	+0.5
2,013,009	+				-0.1
2,013,009	+				-0.5
2,013,009	+				-1.2
2,013,010	-				+0.5
2,013,010	-				-0.2
2,013,034	-				+1.9
2,013,034	-				+0.9
2,013,053	+				+0.5
2,013,054	-				-0.5
2,013,082	+				+1.1
2,013,083	-				+0.5
2,013,086	+				-0.5
2,013,087	-				+0.1
2,013,172	+	fliO	LU632_RS10530	0.29	-0.5
2,013,173	-	fliO	LU632_RS10530	0.29	-0.6
2,013,269	+	fliO	LU632_RS10530	0.53	-2.7
2,013,335	+	fliO	LU632_RS10530	0.70	+3.1
2,013,336	-	fliO	LU632_RS10530	0.70	-1.3
2,013,349	+	fliO	LU632_RS10530	0.73	-0.8
2,013,349	+	fliO	LU632_RS10530	0.73	-0.3
2,013,349	+	fliO	LU632_RS10530	0.73	-0.1
2,013,349	+	fliO	LU632_RS10530	0.73	+1.8
2,013,350	-	fliO	LU632_RS10530	0.73	+2.4
2,013,362	+	fliO	LU632_RS10530	0.77	-1.4
2,013,448	+				-2.1
2,013,449	-				+0.1
2,013,449	-				+0.1
2,013,517	+	fliN	LU632_RS10535	0.15	+0.8
2,013,644	+	fliN	LU632_RS10535	0.46	-1.6
2,013,923	+				-1.5
2,013,924	-				-2.3
2,013,924	-				-0.6
2,013,924	-				-0.8
2,013,956	-	fliM	LU632_RS10540	0.10	-0.9
2,014,012	+	fliM	LU632_RS10540	0.16	+1.5
2,014,012	+	fliM	LU632_RS10540	0.16	-1.6
2,014,012	+	fliM	LU632_RS10540	0.16	-0.8
2,014,013	-	fliM	LU632_RS10540	0.16	+0.3
2,014,013	-	fliM	LU632_RS10540	0.16	-2.2
2,014,013	-	fliM	LU632_RS10540	0.16	-1.5
2,014,047	+	fliM	LU632_RS10540	0.19	-2.2
2,014,048	+	fliM	LU632_RS10540	0.19	+1.4
2,014,048	-	fliM	LU632_RS10540	0.19	-0.9
2,014,127	+	fliM	LU632_RS10540	0.27	+1.4
2,014,127	+	fliM	LU632_RS10540	0.27	+0.6
2,014,128	-	fliM	LU632_RS10540	0.27	+0.6
2,014,131	+	fliM	LU632_RS10540	0.28	+0.1
2,014,131	+	fliM	LU632_RS10540	0.28	+0.1
2,014,261	-	fliM	LU632_RS10540	0.40	-0.6
2,014,325	+	fliM	LU632_RS10540	0.47	-0.6
2,014,326	-	fliM	LU632_RS10540	0.47	-0.8
2,014,326	-	fliM	LU632_RS10540	0.47	-1.0
2,014,326	-	fliM	LU632_RS10540	0.47	-0.4
2,014,367	+	fliM	LU632_RS10540	0.51	+0.1
2,014,561	-	fliM	LU632_RS10540	0.70	+1.5
2,014,596	-	fliM	LU632_RS10540	0.74	+0.4
2,014,662	+	fliM	LU632_RS10540	0.80	-1.9
2,014,663	-	fliM	LU632_RS10540	0.80	-1.6
2,014,726	-	fliM	LU632_RS10540	0.87	+1.1
2,014,867	-				+1.9
2,014,951	+	fliL	LU632_RS10545	0.18	+0.0
2,015,075	-	fliL	LU632_RS10545	0.43	-0.6
2,015,109	+	fliL	LU632_RS10545	0.51	-0.8
2,015,109	+	fliL	LU632_RS10545	0.51	-0.4
2,015,109	+	fliL	LU632_RS10545	0.51	+4.6
2,015,109	+	fliL	LU632_RS10545	0.51	-1.2
2,015,109	+	fliL	LU632_RS10545	0.51	-0.1
2,015,110	-	fliL	LU632_RS10545	0.51	+0.4
2,015,276	+	fliL	LU632_RS10545	0.85	-1.1
2,015,276	+	fliL	LU632_RS10545	0.85	-3.6
2,015,276	+	fliL	LU632_RS10545	0.85	-1.9
2,015,280	-	fliL	LU632_RS10545	0.86	-0.1
2,015,282	+	fliL	LU632_RS10545	0.86	+0.6
2,015,314	+				-1.3
2,015,315	-				+0.5
2,015,347	+				-0.9
2,015,357	-				+0.6
2,015,444	+				-0.5
2,015,445	-				+0.9
2,015,512	-				-0.4
2,015,601	+				+2.0
2,015,607	+				-1.1
2,015,607	+				-0.8
2,015,607	+				-2.2
2,015,608	-				-0.5
2,015,608	-				-0.1
2,015,608	-				-0.8
2,015,623	-				-1.9
2,015,731	+		LU632_RS10550	0.17	-0.2
2,015,787	+		LU632_RS10550	0.22	+1.7
2,015,788	-		LU632_RS10550	0.22	-1.6
2,015,854	+		LU632_RS10550	0.27	-0.8
2,015,854	+		LU632_RS10550	0.27	-0.1
2,015,854	+		LU632_RS10550	0.27	-0.5
2,015,854	+		LU632_RS10550	0.27	-0.1
2,015,855	-		LU632_RS10550	0.27	-2.4
2,015,855	-		LU632_RS10550	0.27	-0.6
2,015,855	-		LU632_RS10550	0.27	-0.8