Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10140

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,938,864	+				-0.3
1,938,992	+		LU632_RS10135	0.11	-1.4
1,938,992	+		LU632_RS10135	0.11	+1.1
1,939,056	-		LU632_RS10135	0.39	-0.8
1,939,056	-		LU632_RS10135	0.39	+0.5
1,939,096	+		LU632_RS10135	0.56	+0.4
1,939,140	-		LU632_RS10135	0.75	-1.9
1,939,179	-				+1.6
1,939,251	+				+0.0
1,939,252	-				-1.7
1,939,252	-				-1.4
1,939,364	-	wrbA	LU632_RS10140	0.24	+0.6
1,939,364	-	wrbA	LU632_RS10140	0.24	-1.1
1,939,504	-	wrbA	LU632_RS10140	0.48	-0.4
1,939,608	+	wrbA	LU632_RS10140	0.65	+0.6
1,939,716	-	wrbA	LU632_RS10140	0.83	+0.8
1,939,837	-				-1.4
1,939,860	-				+0.2
1,939,860	-				+0.7
1,939,897	-				+0.3
1,939,955	+				+0.9
1,939,956	-				+1.1
1,939,956	-				+0.8
1,939,957	+				+0.5
1,939,957	+				-0.3
1,939,957	+				-0.4
1,939,973	+				-0.3
1,939,985	-				-1.0
1,939,985	-				+1.6
1,940,002	+				-1.6
1,940,002	+				-0.1
1,940,151	-				-2.0
1,940,180	-				+0.2
1,940,214	+				-2.2
1,940,299	+				+0.0
1,940,300	-				-0.7
1,940,303	+				-1.4
1,940,375	-				+0.4
1,940,473	+		LU632_RS10145	0.24	+0.0
1,940,474	-		LU632_RS10145	0.24	+1.5
1,940,540	+		LU632_RS10145	0.33	-0.7
1,940,540	+		LU632_RS10145	0.33	+0.1
1,940,591	-		LU632_RS10145	0.41	+1.1
1,940,591	-		LU632_RS10145	0.41	-0.4
1,940,622	+		LU632_RS10145	0.45	+0.4
1,940,622	+		LU632_RS10145	0.45	+0.8
1,940,622	+		LU632_RS10145	0.45	-1.4
1,940,623	-		LU632_RS10145	0.45	+1.8
1,940,623	-		LU632_RS10145	0.45	-1.4
1,940,625	-		LU632_RS10145	0.46	-0.2
1,940,625	-		LU632_RS10145	0.46	+0.8
1,940,775	-		LU632_RS10145	0.68	-1.6
1,940,775	-		LU632_RS10145	0.68	-1.4