Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09970

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,904,908	+	rlmKL	LU632_RS09965	0.56	+0.5
1,904,908	+	rlmKL	LU632_RS09965	0.56	-0.4
1,904,909	-	rlmKL	LU632_RS09965	0.56	-0.3
1,904,909	-	rlmKL	LU632_RS09965	0.56	+0.0
1,905,009	+	rlmKL	LU632_RS09965	0.61	-0.0
1,905,048	-	rlmKL	LU632_RS09965	0.62	+0.3
1,905,056	-	rlmKL	LU632_RS09965	0.63	-0.4
1,905,359	+	rlmKL	LU632_RS09965	0.77	+1.5
1,905,360	-	rlmKL	LU632_RS09965	0.77	+0.3
1,905,360	-	rlmKL	LU632_RS09965	0.77	-1.4
1,905,367	+	rlmKL	LU632_RS09965	0.77	-1.0
1,905,368	-	rlmKL	LU632_RS09965	0.78	+5.0
1,905,368	-	rlmKL	LU632_RS09965	0.78	-0.4
1,905,415	-	rlmKL	LU632_RS09965	0.80	-1.2
1,905,429	+	rlmKL	LU632_RS09965	0.80	+0.0
1,905,439	-	rlmKL	LU632_RS09965	0.81	-0.7
1,905,550	+	rlmKL	LU632_RS09965	0.86	-0.1
1,905,551	-	rlmKL	LU632_RS09965	0.86	-2.6
1,905,576	+	rlmKL	LU632_RS09965	0.87	+0.3
1,905,576	+	rlmKL	LU632_RS09965	0.87	+0.1
1,905,585	+	rlmKL	LU632_RS09965	0.88	+0.6
1,905,618	-	rlmKL	LU632_RS09965	0.89	+0.4
1,905,681	+				+0.4
1,905,681	+				-1.4
1,905,681	+				-0.7
1,905,681	+				-0.7
1,905,682	-				+2.2
1,905,682	-				-1.0
1,905,682	-				+0.4
1,905,841	+				+0.3
1,905,846	+				-0.2
1,905,846	+				+0.5
1,905,846	+				+0.6
1,905,863	+				+0.1
1,905,864	-				-1.6
1,905,864	-				+1.9
1,905,920	-				-0.7
1,906,028	+				+1.8
1,906,032	+				+0.9
1,906,032	+				-1.4
1,906,032	+				+1.3
1,906,096	+		LU632_RS09970	0.13	-0.5
1,906,096	+		LU632_RS09970	0.13	-1.1
1,906,097	-		LU632_RS09970	0.13	-0.7
1,906,097	-		LU632_RS09970	0.13	-0.4
1,906,097	-		LU632_RS09970	0.13	-0.4
1,906,099	-		LU632_RS09970	0.13	-2.0
1,906,367	+		LU632_RS09970	0.27	+1.6
1,906,401	-		LU632_RS09970	0.29	-1.6
1,906,569	+		LU632_RS09970	0.38	-3.2
1,906,569	+		LU632_RS09970	0.38	-0.6
1,906,570	-		LU632_RS09970	0.38	-0.7
1,906,570	-		LU632_RS09970	0.38	-2.0
1,906,570	-		LU632_RS09970	0.38	-2.4
1,906,688	+		LU632_RS09970	0.44	+0.6
1,906,828	-		LU632_RS09970	0.51	+0.6
1,906,874	-		LU632_RS09970	0.54	+0.0
1,906,989	-		LU632_RS09970	0.60	-0.3
1,906,989	-		LU632_RS09970	0.60	-0.4
1,907,080	+		LU632_RS09970	0.64	+0.4
1,907,107	+		LU632_RS09970	0.66	+0.9
1,907,107	+		LU632_RS09970	0.66	+1.2
1,907,107	+		LU632_RS09970	0.66	+1.2
1,907,108	-		LU632_RS09970	0.66	+0.0
1,907,108	-		LU632_RS09970	0.66	-1.5
1,907,115	+		LU632_RS09970	0.66	+0.3
1,907,187	-		LU632_RS09970	0.70	+0.0
1,907,230	+		LU632_RS09970	0.72	-0.8
1,907,233	+		LU632_RS09970	0.72	-0.1
1,907,326	+		LU632_RS09970	0.77	+1.0
1,907,354	+		LU632_RS09970	0.79	+0.5
1,907,448	-		LU632_RS09970	0.84	-0.4
1,907,495	-		LU632_RS09970	0.86	-0.2
1,907,495	-		LU632_RS09970	0.86	+0.5
1,907,605	+				+0.4
1,907,606	-				-1.9
1,907,606	-				+0.4
1,907,764	-				-3.5
1,907,783	+				-1.6
1,907,788	-				+0.3
1,907,788	-				+0.9
1,907,968	-	pqiA	LU632_RS09975	0.14	-0.4
1,908,003	+	pqiA	LU632_RS09975	0.17	-2.1
1,908,004	-	pqiA	LU632_RS09975	0.17	-1.4
1,908,073	+	pqiA	LU632_RS09975	0.22	-0.2
1,908,096	+	pqiA	LU632_RS09975	0.24	+0.0
1,908,129	+	pqiA	LU632_RS09975	0.27	-0.7
1,908,162	-	pqiA	LU632_RS09975	0.29	+0.6
1,908,496	-	pqiA	LU632_RS09975	0.56	-2.3
1,908,496	-	pqiA	LU632_RS09975	0.56	+1.6
1,908,582	-	pqiA	LU632_RS09975	0.62	-1.4
1,908,636	+	pqiA	LU632_RS09975	0.67	+0.3