Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09215

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,734,596	-				+0.1
1,734,616	-				-1.1
1,734,616	-				+1.7
1,734,619	-				+1.3
1,734,619	-				-1.4
1,734,682	-				+0.6
1,734,682	-				+2.7
1,734,828	+				-0.2
1,734,828	+				-0.5
1,734,841	+				-1.3
1,734,842	-				-1.5
1,734,882	+		LU632_RS09210	0.14	+0.5
1,734,883	-		LU632_RS09210	0.14	-0.0
1,734,883	-		LU632_RS09210	0.14	-1.3
1,734,883	-		LU632_RS09210	0.14	+1.7
1,734,883	-		LU632_RS09210	0.14	-0.5
1,734,883	-		LU632_RS09210	0.14	-1.3
1,734,944	+		LU632_RS09210	0.30	-0.3
1,734,944	+		LU632_RS09210	0.30	+0.1
1,734,944	+		LU632_RS09210	0.30	-2.2
1,734,944	+		LU632_RS09210	0.30	-0.4
1,734,945	-		LU632_RS09210	0.30	+2.3
1,734,945	-		LU632_RS09210	0.30	-0.5
1,734,945	-		LU632_RS09210	0.30	-1.4
1,734,953	-		LU632_RS09210	0.32	+0.5
1,734,953	-		LU632_RS09210	0.32	-1.7
1,734,954	+		LU632_RS09210	0.32	+0.7
1,734,954	+		LU632_RS09210	0.32	+0.8
1,734,955	-		LU632_RS09210	0.33	+1.3
1,734,991	+		LU632_RS09210	0.42	-1.4
1,735,055	-		LU632_RS09210	0.59	-1.1
1,735,062	-		LU632_RS09210	0.60	-0.8
1,735,064	+		LU632_RS09210	0.61	-0.0
1,735,065	-		LU632_RS09210	0.61	-1.0
1,735,091	+		LU632_RS09210	0.68	-0.1
1,735,382	-				+0.5
1,735,415	+				-1.1
1,735,416	-				-1.6
1,735,461	-				-0.9
1,735,461	-				+2.4
1,735,476	-				-0.2
1,735,520	+				-1.0
1,735,521	-				-0.9
1,735,581	+				+1.7
1,735,708	+	rhlE	LU632_RS09215	0.13	-0.1
1,735,822	-	rhlE	LU632_RS09215	0.21	+0.7
1,735,846	+	rhlE	LU632_RS09215	0.23	+0.7
1,735,865	+	rhlE	LU632_RS09215	0.24	-0.6
1,735,903	+	rhlE	LU632_RS09215	0.27	-0.7
1,735,904	-	rhlE	LU632_RS09215	0.27	-0.7
1,736,103	-	rhlE	LU632_RS09215	0.41	+1.1
1,736,103	-	rhlE	LU632_RS09215	0.41	-2.0
1,736,130	-	rhlE	LU632_RS09215	0.43	-0.3
1,736,270	-	rhlE	LU632_RS09215	0.53	-1.5
1,736,319	-	rhlE	LU632_RS09215	0.57	-0.3
1,736,450	+	rhlE	LU632_RS09215	0.66	-1.1
1,736,450	+	rhlE	LU632_RS09215	0.66	-1.3
1,736,450	+	rhlE	LU632_RS09215	0.66	+0.8
1,736,478	+	rhlE	LU632_RS09215	0.68	-2.0
1,736,479	-	rhlE	LU632_RS09215	0.68	+0.4
1,736,479	-	rhlE	LU632_RS09215	0.68	-0.7
1,736,505	+	rhlE	LU632_RS09215	0.70	-2.0
1,736,506	-	rhlE	LU632_RS09215	0.70	-0.9
1,736,506	-	rhlE	LU632_RS09215	0.70	-1.2
1,736,509	+	rhlE	LU632_RS09215	0.70	-2.5
1,736,510	-	rhlE	LU632_RS09215	0.70	-1.3
1,736,582	+	rhlE	LU632_RS09215	0.75	-0.3
1,736,598	-	rhlE	LU632_RS09215	0.77	+1.0
1,736,667	-	rhlE	LU632_RS09215	0.81	-2.7
1,736,926	-				+0.3
1,737,060	-				+0.1
1,737,493	+	dusC	LU632_RS09220	0.54	-0.2
1,737,562	+	dusC	LU632_RS09220	0.61	-1.1
1,737,620	-	dusC	LU632_RS09220	0.68	+0.5
1,737,670	+	dusC	LU632_RS09220	0.73	+2.7
1,737,689	-	dusC	LU632_RS09220	0.75	-2.4
1,737,802	+	dusC	LU632_RS09220	0.87	+1.3
1,737,803	-	dusC	LU632_RS09220	0.87	-0.5
1,737,901	+				-0.3
1,737,902	-				+0.4