Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08800 and LU632_RS08805 are separated by 182 nucleotides LU632_RS08805 and wcaK are separated by 148 nucleotides
LU632_RS08800: LU632_RS08800 - glycosyltransferase, at 1,655,410 to 1,656,444
_RS08800
LU632_RS08805: LU632_RS08805 - phage tailspike protein, at 1,656,627 to 1,658,843
_RS08805
LU632_RS08810: wcaK - colanic acid biosynthesis pyruvyl transferase WcaK, at 1,658,992 to 1,660,239
wcaK
Position (kb) 1656
1657
1658
1659 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 1655.896 kb on + strand, within LU632_RS08800 at 1656.003 kb on - strand, within LU632_RS08800 at 1656.127 kb on - strand, within LU632_RS08800 at 1656.137 kb on - strand, within LU632_RS08800 at 1656.137 kb on - strand, within LU632_RS08800 at 1656.414 kb on + strand at 1656.418 kb on - strand at 1656.466 kb on + strand at 1656.466 kb on + strand at 1656.470 kb on + strand at 1656.495 kb on + strand at 1656.496 kb on - strand at 1656.496 kb on - strand at 1656.496 kb on - strand at 1656.585 kb on + strand at 1656.585 kb on + strand at 1656.588 kb on + strand at 1656.589 kb on - strand at 1656.620 kb on + strand at 1656.621 kb on - strand at 1656.796 kb on - strand at 1656.801 kb on - strand at 1656.840 kb on + strand at 1656.848 kb on + strand at 1656.948 kb on - strand, within LU632_RS08805 at 1657.053 kb on - strand, within LU632_RS08805 at 1657.153 kb on + strand, within LU632_RS08805 at 1657.153 kb on + strand, within LU632_RS08805 at 1657.153 kb on + strand, within LU632_RS08805 at 1657.154 kb on - strand, within LU632_RS08805 at 1657.154 kb on - strand, within LU632_RS08805 at 1657.154 kb on - strand, within LU632_RS08805 at 1657.157 kb on + strand, within LU632_RS08805 at 1657.157 kb on + strand, within LU632_RS08805 at 1657.157 kb on + strand, within LU632_RS08805 at 1657.157 kb on + strand, within LU632_RS08805 at 1657.158 kb on - strand, within LU632_RS08805 at 1657.158 kb on - strand, within LU632_RS08805 at 1657.160 kb on + strand, within LU632_RS08805 at 1657.161 kb on - strand, within LU632_RS08805 at 1657.161 kb on - strand, within LU632_RS08805 at 1657.161 kb on - strand, within LU632_RS08805 at 1657.401 kb on + strand, within LU632_RS08805 at 1657.401 kb on + strand, within LU632_RS08805 at 1657.401 kb on + strand, within LU632_RS08805 at 1657.401 kb on + strand, within LU632_RS08805 at 1657.401 kb on + strand, within LU632_RS08805 at 1657.402 kb on - strand, within LU632_RS08805 at 1657.402 kb on - strand, within LU632_RS08805 at 1657.536 kb on + strand, within LU632_RS08805 at 1657.537 kb on - strand, within LU632_RS08805 at 1657.845 kb on - strand, within LU632_RS08805 at 1657.893 kb on + strand, within LU632_RS08805 at 1657.893 kb on + strand, within LU632_RS08805 at 1657.893 kb on + strand, within LU632_RS08805 at 1657.893 kb on + strand, within LU632_RS08805 at 1657.898 kb on + strand, within LU632_RS08805 at 1657.898 kb on + strand, within LU632_RS08805 at 1658.071 kb on + strand, within LU632_RS08805 at 1658.071 kb on + strand, within LU632_RS08805 at 1658.097 kb on - strand, within LU632_RS08805 at 1658.097 kb on - strand, within LU632_RS08805 at 1658.143 kb on - strand, within LU632_RS08805 at 1658.202 kb on + strand, within LU632_RS08805 at 1658.203 kb on - strand, within LU632_RS08805 at 1658.203 kb on - strand, within LU632_RS08805 at 1658.203 kb on - strand, within LU632_RS08805 at 1658.203 kb on - strand, within LU632_RS08805 at 1658.208 kb on + strand, within LU632_RS08805 at 1658.208 kb on + strand, within LU632_RS08805 at 1658.208 kb on + strand, within LU632_RS08805 at 1658.209 kb on - strand, within LU632_RS08805 at 1658.342 kb on + strand, within LU632_RS08805 at 1658.343 kb on - strand, within LU632_RS08805 at 1658.347 kb on - strand, within LU632_RS08805 at 1658.406 kb on - strand, within LU632_RS08805 at 1658.672 kb on + strand at 1658.673 kb on - strand at 1658.673 kb on - strand at 1658.673 kb on - strand at 1658.687 kb on + strand at 1658.698 kb on + strand at 1658.759 kb on - strand at 1658.893 kb on - strand at 1659.046 kb on - strand at 1659.046 kb on - strand at 1659.133 kb on + strand, within wcaK at 1659.425 kb on + strand, within wcaK at 1659.425 kb on + strand, within wcaK at 1659.426 kb on - strand, within wcaK at 1659.426 kb on - strand, within wcaK at 1659.426 kb on - strand, within wcaK at 1659.427 kb on + strand, within wcaK at 1659.427 kb on + strand, within wcaK at 1659.427 kb on + strand, within wcaK at 1659.427 kb on + strand, within wcaK at 1659.427 kb on + strand, within wcaK at 1659.427 kb on + strand, within wcaK at 1659.428 kb on - strand, within wcaK at 1659.428 kb on - strand, within wcaK at 1659.428 kb on - strand, within wcaK at 1659.428 kb on - strand, within wcaK at 1659.428 kb on - strand, within wcaK at 1659.428 kb on - strand, within wcaK at 1659.428 kb on - strand, within wcaK at 1659.429 kb on + strand, within wcaK at 1659.429 kb on + strand, within wcaK at 1659.429 kb on + strand, within wcaK at 1659.430 kb on - strand, within wcaK at 1659.430 kb on - strand, within wcaK at 1659.430 kb on - strand, within wcaK at 1659.681 kb on + strand, within wcaK at 1659.681 kb on + strand, within wcaK at 1659.685 kb on - strand, within wcaK at 1659.810 kb on + strand, within wcaK at 1659.810 kb on + strand, within wcaK at 1659.810 kb on + strand, within wcaK at 1659.811 kb on - strand, within wcaK at 1659.832 kb on + strand, within wcaK
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 1,655,896 + LU632_RS08800 0.47 -1.2 1,656,003 - LU632_RS08800 0.57 +0.2 1,656,127 - LU632_RS08800 0.69 -2.5 1,656,137 - LU632_RS08800 0.70 -3.9 1,656,137 - LU632_RS08800 0.70 -0.2 1,656,414 + +0.8 1,656,418 - -3.4 1,656,466 + -1.5 1,656,466 + -0.6 1,656,470 + +3.0 1,656,495 + +0.8 1,656,496 - -2.2 1,656,496 - -1.6 1,656,496 - -0.8 1,656,585 + +0.5 1,656,585 + +1.2 1,656,588 + -1.3 1,656,589 - +0.8 1,656,620 + -2.7 1,656,621 - -0.6 1,656,796 - -1.4 1,656,801 - -0.6 1,656,840 + -0.8 1,656,848 + -1.8 1,656,948 - LU632_RS08805 0.14 -1.9 1,657,053 - LU632_RS08805 0.19 -2.7 1,657,153 + LU632_RS08805 0.24 -0.4 1,657,153 + LU632_RS08805 0.24 -3.6 1,657,153 + LU632_RS08805 0.24 -2.1 1,657,154 - LU632_RS08805 0.24 -1.2 1,657,154 - LU632_RS08805 0.24 -3.3 1,657,154 - LU632_RS08805 0.24 -0.1 1,657,157 + LU632_RS08805 0.24 -3.7 1,657,157 + LU632_RS08805 0.24 -2.5 1,657,157 + LU632_RS08805 0.24 -0.6 1,657,157 + LU632_RS08805 0.24 -2.2 1,657,158 - LU632_RS08805 0.24 -0.8 1,657,158 - LU632_RS08805 0.24 -2.5 1,657,160 + LU632_RS08805 0.24 -4.1 1,657,161 - LU632_RS08805 0.24 -2.6 1,657,161 - LU632_RS08805 0.24 -3.0 1,657,161 - LU632_RS08805 0.24 -3.4 1,657,401 + LU632_RS08805 0.35 -3.0 1,657,401 + LU632_RS08805 0.35 -1.1 1,657,401 + LU632_RS08805 0.35 -2.0 1,657,401 + LU632_RS08805 0.35 -5.4 1,657,401 + LU632_RS08805 0.35 -2.1 1,657,402 - LU632_RS08805 0.35 +0.3 1,657,402 - LU632_RS08805 0.35 -3.2 1,657,536 + LU632_RS08805 0.41 -4.2 1,657,537 - LU632_RS08805 0.41 -0.6 1,657,845 - LU632_RS08805 0.55 -3.3 1,657,893 + LU632_RS08805 0.57 -2.0 1,657,893 + LU632_RS08805 0.57 -0.6 1,657,893 + LU632_RS08805 0.57 -1.3 1,657,893 + LU632_RS08805 0.57 -0.6 1,657,898 + LU632_RS08805 0.57 -3.8 1,657,898 + LU632_RS08805 0.57 -1.8 1,658,071 + LU632_RS08805 0.65 -3.5 1,658,071 + LU632_RS08805 0.65 -3.0 1,658,097 - LU632_RS08805 0.66 -1.7 1,658,097 - LU632_RS08805 0.66 -1.5 1,658,143 - LU632_RS08805 0.68 -1.7 1,658,202 + LU632_RS08805 0.71 -1.6 1,658,203 - LU632_RS08805 0.71 -1.9 1,658,203 - LU632_RS08805 0.71 +0.5 1,658,203 - LU632_RS08805 0.71 -1.7 1,658,203 - LU632_RS08805 0.71 -1.4 1,658,208 + LU632_RS08805 0.71 -0.6 1,658,208 + LU632_RS08805 0.71 -2.2 1,658,208 + LU632_RS08805 0.71 +0.2 1,658,209 - LU632_RS08805 0.71 -1.3 1,658,342 + LU632_RS08805 0.77 -1.8 1,658,343 - LU632_RS08805 0.77 -3.0 1,658,347 - LU632_RS08805 0.78 -1.5 1,658,406 - LU632_RS08805 0.80 +1.2 1,658,672 + -4.0 1,658,673 - -1.7 1,658,673 - -1.0 1,658,673 - -2.8 1,658,687 + -4.5 1,658,698 + -2.3 1,658,759 - -3.0 1,658,893 - -0.3 1,659,046 - -3.4 1,659,046 - -2.8 1,659,133 + wcaK LU632_RS08810 0.11 +0.8 1,659,425 + wcaK LU632_RS08810 0.35 -1.7 1,659,425 + wcaK LU632_RS08810 0.35 +1.4 1,659,426 - wcaK LU632_RS08810 0.35 +0.2 1,659,426 - wcaK LU632_RS08810 0.35 -2.2 1,659,426 - wcaK LU632_RS08810 0.35 -1.0 1,659,427 + wcaK LU632_RS08810 0.35 -1.1 1,659,427 + wcaK LU632_RS08810 0.35 -1.2 1,659,427 + wcaK LU632_RS08810 0.35 -2.4 1,659,427 + wcaK LU632_RS08810 0.35 -0.6 1,659,427 + wcaK LU632_RS08810 0.35 -0.8 1,659,427 + wcaK LU632_RS08810 0.35 -0.8 1,659,428 - wcaK LU632_RS08810 0.35 -0.9 1,659,428 - wcaK LU632_RS08810 0.35 +0.7 1,659,428 - wcaK LU632_RS08810 0.35 -1.1 1,659,428 - wcaK LU632_RS08810 0.35 +0.2 1,659,428 - wcaK LU632_RS08810 0.35 -0.8 1,659,428 - wcaK LU632_RS08810 0.35 -0.8 1,659,428 - wcaK LU632_RS08810 0.35 -0.1 1,659,429 + wcaK LU632_RS08810 0.35 +0.1 1,659,429 + wcaK LU632_RS08810 0.35 +1.1 1,659,429 + wcaK LU632_RS08810 0.35 +1.1 1,659,430 - wcaK LU632_RS08810 0.35 -2.4 1,659,430 - wcaK LU632_RS08810 0.35 -4.1 1,659,430 - wcaK LU632_RS08810 0.35 -1.3 1,659,681 + wcaK LU632_RS08810 0.55 -0.1 1,659,681 + wcaK LU632_RS08810 0.55 +0.5 1,659,685 - wcaK LU632_RS08810 0.56 +0.2 1,659,810 + wcaK LU632_RS08810 0.66 -1.1 1,659,810 + wcaK LU632_RS08810 0.66 -1.7 1,659,810 + wcaK LU632_RS08810 0.66 -0.3 1,659,811 - wcaK LU632_RS08810 0.66 -0.8 1,659,832 + wcaK LU632_RS08810 0.67 -0.2
Or see this region's nucleotide sequence