Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08760

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,644,389	-	asmA	LU632_RS08750	0.79	+1.3
1,644,439	+	asmA	LU632_RS08750	0.82	-0.8
1,644,439	+	asmA	LU632_RS08750	0.82	-0.2
1,644,440	-	asmA	LU632_RS08750	0.82	+0.2
1,644,487	+	asmA	LU632_RS08750	0.84	-1.7
1,644,516	-	asmA	LU632_RS08750	0.86	-0.5
1,644,621	+				-1.9
1,644,646	+				-1.6
1,644,650	+				-2.4
1,644,650	+				+0.4
1,644,651	-				-0.6
1,644,651	-				-1.2
1,644,684	+				-0.4
1,644,685	-				+0.5
1,644,685	-				-0.2
1,644,775	+				+1.4
1,644,776	-				-0.5
1,644,776	-				-0.2
1,644,776	-				-0.5
1,644,894	+				-0.7
1,644,894	+				+0.6
1,644,895	-				-0.8
1,644,895	-				-0.7
1,644,952	-		LU632_RS08755	0.20	-0.2
1,645,016	+		LU632_RS08755	0.36	+0.2
1,645,016	+		LU632_RS08755	0.36	-1.4
1,645,017	-		LU632_RS08755	0.37	-1.0
1,645,017	-		LU632_RS08755	0.37	+0.2
1,645,017	-		LU632_RS08755	0.37	-0.4
1,645,017	-		LU632_RS08755	0.37	+1.3
1,645,017	-		LU632_RS08755	0.37	-2.5
1,645,017	-		LU632_RS08755	0.37	-1.7
1,645,024	-		LU632_RS08755	0.38	+0.8
1,645,079	+		LU632_RS08755	0.53	-1.9
1,645,080	-		LU632_RS08755	0.53	-0.2
1,645,080	-		LU632_RS08755	0.53	+1.8
1,645,080	-		LU632_RS08755	0.53	+0.3
1,645,088	+		LU632_RS08755	0.55	+0.0
1,645,088	+		LU632_RS08755	0.55	-1.4
1,645,089	-		LU632_RS08755	0.55	+0.5
1,645,223	-				-0.9
1,645,282	+				-0.2
1,645,282	+				-0.8
1,645,285	+				+0.6
1,645,286	-				+0.0
1,645,289	+				+0.5
1,645,300	+				-1.5
1,645,301	-				+0.2
1,645,301	-				+0.2
1,646,128	-				-0.5
1,646,402	+				-1.8
1,646,406	+				+3.7
1,646,406	+				+4.4
1,646,411	+				+3.8
1,646,427	-				+4.4
1,646,465	-				+3.9
1,646,472	+				+0.9
1,646,472	+				-0.5
1,646,536	+				+2.3
1,646,613	-				+2.3
1,646,646	-				+3.4
1,646,751	-				+2.4
1,646,751	-				+4.5
1,646,773	+				+1.8
1,646,978	-	wbaP	LU632_RS08765	0.12	+3.7
1,646,987	-	wbaP	LU632_RS08765	0.12	+2.2
1,646,990	-	wbaP	LU632_RS08765	0.13	-0.2
1,647,039	-	wbaP	LU632_RS08765	0.16	+4.2
1,647,040	+	wbaP	LU632_RS08765	0.16	+2.3