Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08125

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,519,845	-				-0.1
1,520,231	+	menC	LU632_RS08120	0.42	+1.2
1,520,231	+	menC	LU632_RS08120	0.42	-0.4
1,520,231	+	menC	LU632_RS08120	0.42	+0.5
1,520,232	-	menC	LU632_RS08120	0.42	+1.4
1,520,232	-	menC	LU632_RS08120	0.42	+1.6
1,520,232	-	menC	LU632_RS08120	0.42	-0.1
1,520,232	-	menC	LU632_RS08120	0.42	-0.2
1,520,368	+	menC	LU632_RS08120	0.56	+0.3
1,520,404	+	menC	LU632_RS08120	0.60	-2.0
1,520,778	+				-1.0
1,520,929	+	menE	LU632_RS08125	0.11	-0.2
1,520,930	-	menE	LU632_RS08125	0.11	+0.1
1,520,949	-	menE	LU632_RS08125	0.12	-0.0
1,520,986	+	menE	LU632_RS08125	0.15	-1.8
1,520,997	-	menE	LU632_RS08125	0.16	-0.2
1,521,099	-	menE	LU632_RS08125	0.23	+0.6
1,521,236	+	menE	LU632_RS08125	0.33	-0.0
1,521,237	-	menE	LU632_RS08125	0.33	-0.6
1,521,237	-	menE	LU632_RS08125	0.33	-1.7
1,521,240	+	menE	LU632_RS08125	0.34	+0.6
1,521,240	+	menE	LU632_RS08125	0.34	+1.1
1,521,287	+	menE	LU632_RS08125	0.37	+0.2
1,521,402	+	menE	LU632_RS08125	0.45	+0.7
1,521,403	-	menE	LU632_RS08125	0.46	+0.8
1,521,432	+	menE	LU632_RS08125	0.48	+1.1
1,521,512	+	menE	LU632_RS08125	0.53	+0.8
1,521,513	-	menE	LU632_RS08125	0.54	+0.8
1,521,516	-	menE	LU632_RS08125	0.54	+0.4
1,521,680	+	menE	LU632_RS08125	0.66	-0.7
1,521,945	-	menE	LU632_RS08125	0.85	-0.2
1,521,945	-	menE	LU632_RS08125	0.85	-0.2
1,522,052	+				-1.5
1,522,290	+				+0.8
1,522,338	+				+1.8
1,522,338	+				-0.3
1,522,395	+				+0.4
1,522,395	+				-0.2
1,522,396	-				+0.3
1,522,399	+				-1.7
1,522,399	+				-1.0
1,522,400	-				+0.8
1,522,400	-				+2.3
1,522,400	-				-0.5
1,522,400	-				+0.0
1,522,400	-				-0.5
1,522,400	-				+0.1
1,522,400	-				+0.3
1,522,400	-				+0.6
1,522,405	+				+0.1
1,522,853	+		LU632_RS08130	0.35	+0.5
1,522,853	+		LU632_RS08130	0.35	+5.4
1,522,854	-		LU632_RS08130	0.35	-0.3
1,522,953	+		LU632_RS08130	0.43	+1.1