Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07930

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,482,964	-				+0.4
1,482,983	-				+0.9
1,482,983	-				+1.3
1,482,983	-				-1.4
1,483,163	-				-1.7
1,483,163	-				+0.4
1,483,285	+		LU632_RS07930	0.13	-1.1
1,483,285	+		LU632_RS07930	0.13	+2.0
1,483,285	+		LU632_RS07930	0.13	-0.4
1,483,285	+		LU632_RS07930	0.13	+0.1
1,483,285	+		LU632_RS07930	0.13	+0.3
1,483,286	-		LU632_RS07930	0.13	+1.1
1,483,286	-		LU632_RS07930	0.13	-0.1
1,483,286	-		LU632_RS07930	0.13	-1.8
1,483,288	-		LU632_RS07930	0.13	+1.5
1,483,288	-		LU632_RS07930	0.13	+0.2
1,483,372	+		LU632_RS07930	0.32	+1.1
1,483,373	-		LU632_RS07930	0.32	+1.4
1,483,464	+		LU632_RS07930	0.52	-2.3
1,483,497	+		LU632_RS07930	0.59	+2.7
1,483,498	-		LU632_RS07930	0.60	+1.3
1,483,534	-		LU632_RS07930	0.68	+9.5
1,483,534	-		LU632_RS07930	0.68	+1.5
1,483,610	-		LU632_RS07930	0.84	+0.8
1,483,644	+				+1.7
1,483,775	+				+0.9
1,483,776	-				-1.1
1,483,798	+				+0.8
1,483,806	-				-0.2
1,483,806	-				+1.1
1,483,867	+				+2.0
1,483,869	+				-0.3
1,483,869	+				+0.3
1,483,881	+		LU632_RS07935	0.11	-1.2
1,484,029	+		LU632_RS07935	0.41	+1.2
1,484,030	-		LU632_RS07935	0.41	+0.7
1,484,155	-		LU632_RS07935	0.67	-0.6
1,484,158	-		LU632_RS07935	0.67	+0.3
1,484,184	+		LU632_RS07935	0.73	+0.7
1,484,206	-		LU632_RS07935	0.77	+2.6
1,484,307	+				+0.2
1,484,308	-				+0.1
1,484,343	-				-0.3
1,484,343	-				+0.3
1,484,459	+		LU632_RS07940	0.19	-1.3
1,484,499	-		LU632_RS07940	0.25	+1.2
1,484,552	+		LU632_RS07940	0.33	+0.1
1,484,552	+		LU632_RS07940	0.33	+1.3
1,484,586	-		LU632_RS07940	0.38	-0.4