Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07740 and LU632_RS07745 are separated by 155 nucleotides LU632_RS07745 and LU632_RS07750 are separated by 71 nucleotides LU632_RS07750 and LU632_RS07755 are separated by 122 nucleotides LU632_RS07755 and sixA are separated by 168 nucleotides
LU632_RS07740: LU632_RS07740 - phage transcriptional regulator, at 1,445,065 to 1,445,454
_RS07740
LU632_RS07745: LU632_RS07745 - hypothetical protein, at 1,445,610 to 1,446,043
_RS07745
LU632_RS07750: LU632_RS07750 - 3-hydroxyacyl-CoA dehydrogenase family protein, at 1,446,115 to 1,446,303
_RS07750
LU632_RS07755: LU632_RS07755 - hypothetical protein, at 1,446,426 to 1,446,764
_RS07755
LU632_RS07760: sixA - phosphohistidine phosphatase SixA, at 1,446,933 to 1,447,415
sixA
Position (kb) 1446
1447 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1445.158 kb on - strand, within LU632_RS07740 at 1445.356 kb on + strand, within LU632_RS07740 at 1445.356 kb on + strand, within LU632_RS07740 at 1445.513 kb on + strand at 1445.518 kb on + strand at 1445.527 kb on + strand at 1445.531 kb on + strand at 1445.532 kb on - strand at 1445.577 kb on + strand at 1445.586 kb on + strand at 1445.663 kb on - strand, within LU632_RS07745 at 1445.676 kb on + strand, within LU632_RS07745 at 1445.676 kb on + strand, within LU632_RS07745 at 1445.714 kb on + strand, within LU632_RS07745 at 1445.872 kb on + strand, within LU632_RS07745 at 1445.876 kb on - strand, within LU632_RS07745 at 1446.009 kb on - strand at 1446.009 kb on - strand at 1446.009 kb on - strand at 1446.009 kb on - strand at 1446.088 kb on + strand at 1446.217 kb on + strand, within LU632_RS07750 at 1446.218 kb on - strand, within LU632_RS07750 at 1446.247 kb on - strand, within LU632_RS07750 at 1446.249 kb on + strand, within LU632_RS07750 at 1446.249 kb on + strand, within LU632_RS07750 at 1446.249 kb on + strand, within LU632_RS07750 at 1446.250 kb on - strand, within LU632_RS07750 at 1446.250 kb on - strand, within LU632_RS07750 at 1446.354 kb on + strand at 1446.354 kb on + strand at 1446.355 kb on - strand at 1446.360 kb on + strand at 1446.361 kb on - strand at 1446.408 kb on + strand at 1446.408 kb on + strand at 1446.408 kb on + strand at 1446.409 kb on - strand at 1446.410 kb on + strand at 1446.410 kb on + strand at 1446.435 kb on + strand at 1446.518 kb on - strand, within LU632_RS07755 at 1446.552 kb on + strand, within LU632_RS07755 at 1446.553 kb on - strand, within LU632_RS07755 at 1446.594 kb on + strand, within LU632_RS07755 at 1446.596 kb on + strand, within LU632_RS07755 at 1446.597 kb on - strand, within LU632_RS07755 at 1446.626 kb on + strand, within LU632_RS07755 at 1446.630 kb on - strand, within LU632_RS07755 at 1446.782 kb on + strand at 1446.782 kb on + strand at 1446.795 kb on + strand at 1446.816 kb on - strand at 1446.818 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 1,445,158 - LU632_RS07740 0.24 -0.2 1,445,356 + LU632_RS07740 0.75 -2.5 1,445,356 + LU632_RS07740 0.75 +1.0 1,445,513 + +1.3 1,445,518 + +0.4 1,445,527 + +1.4 1,445,531 + -0.5 1,445,532 - +2.0 1,445,577 + -0.5 1,445,586 + -0.6 1,445,663 - LU632_RS07745 0.12 +0.5 1,445,676 + LU632_RS07745 0.15 -1.6 1,445,676 + LU632_RS07745 0.15 +1.6 1,445,714 + LU632_RS07745 0.24 +0.6 1,445,872 + LU632_RS07745 0.60 -0.6 1,445,876 - LU632_RS07745 0.61 +0.4 1,446,009 - +2.5 1,446,009 - -0.2 1,446,009 - -0.9 1,446,009 - +0.3 1,446,088 + -0.4 1,446,217 + LU632_RS07750 0.54 -0.1 1,446,218 - LU632_RS07750 0.54 -0.6 1,446,247 - LU632_RS07750 0.70 +1.5 1,446,249 + LU632_RS07750 0.71 +0.7 1,446,249 + LU632_RS07750 0.71 +0.4 1,446,249 + LU632_RS07750 0.71 -2.6 1,446,250 - LU632_RS07750 0.71 -0.3 1,446,250 - LU632_RS07750 0.71 -2.0 1,446,354 + +0.6 1,446,354 + -1.6 1,446,355 - -1.3 1,446,360 + -0.3 1,446,361 - +0.3 1,446,408 + +2.5 1,446,408 + -0.9 1,446,408 + -0.5 1,446,409 - +0.7 1,446,410 + +1.5 1,446,410 + -0.6 1,446,435 + +0.2 1,446,518 - LU632_RS07755 0.27 -0.8 1,446,552 + LU632_RS07755 0.37 +0.6 1,446,553 - LU632_RS07755 0.37 -1.2 1,446,594 + LU632_RS07755 0.50 +0.3 1,446,596 + LU632_RS07755 0.50 +1.9 1,446,597 - LU632_RS07755 0.50 -0.6 1,446,626 + LU632_RS07755 0.59 -0.1 1,446,630 - LU632_RS07755 0.60 +1.3 1,446,782 + +2.9 1,446,782 + +1.1 1,446,795 + -0.5 1,446,816 - -0.9 1,446,818 + -0.9
Or see this region's nucleotide sequence