Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07200 and LU632_RS07205 are separated by 327 nucleotides LU632_RS07205 and LU632_RS07210 are separated by 4 nucleotides LU632_RS07210 and LU632_RS07215 are separated by 218 nucleotides
LU632_RS07200: LU632_RS07200 - IS256 family transposase, at 1,364,419 to 1,365,627
_RS07200
LU632_RS07205: LU632_RS07205 - DUF6516 family protein, at 1,365,955 to 1,366,149
_RS07205
LU632_RS07210: LU632_RS07210 - transcriptional regulator, at 1,366,154 to 1,366,513
_RS07210
LU632_RS07215: LU632_RS07215 - antitermination protein Q, at 1,366,732 to 1,367,187
_RS07215
Position (kb) 1365
1366
1367 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1365.639 kb on + strand at 1365.675 kb on + strand at 1365.676 kb on - strand at 1365.676 kb on - strand at 1365.680 kb on - strand at 1365.744 kb on - strand at 1365.755 kb on - strand at 1365.766 kb on - strand at 1365.768 kb on + strand at 1365.769 kb on - strand at 1365.769 kb on - strand at 1365.783 kb on + strand at 1365.836 kb on - strand at 1365.903 kb on + strand at 1365.904 kb on - strand at 1365.944 kb on + strand at 1365.944 kb on + strand at 1365.960 kb on - strand at 1365.976 kb on + strand, within LU632_RS07205 at 1365.977 kb on - strand, within LU632_RS07205 at 1365.983 kb on - strand, within LU632_RS07205 at 1365.995 kb on - strand, within LU632_RS07205 at 1365.995 kb on - strand, within LU632_RS07205 at 1366.058 kb on - strand, within LU632_RS07205 at 1366.058 kb on - strand, within LU632_RS07205 at 1366.058 kb on - strand, within LU632_RS07205 at 1366.058 kb on - strand, within LU632_RS07205 at 1366.085 kb on + strand, within LU632_RS07205 at 1366.128 kb on + strand, within LU632_RS07205 at 1366.128 kb on + strand, within LU632_RS07205 at 1366.129 kb on - strand, within LU632_RS07205 at 1366.129 kb on - strand, within LU632_RS07205 at 1366.132 kb on - strand at 1366.176 kb on + strand at 1366.396 kb on - strand, within LU632_RS07210 at 1366.397 kb on + strand, within LU632_RS07210 at 1366.398 kb on - strand, within LU632_RS07210 at 1366.398 kb on - strand, within LU632_RS07210 at 1366.398 kb on - strand, within LU632_RS07210 at 1366.490 kb on - strand at 1366.524 kb on + strand at 1366.542 kb on + strand at 1366.657 kb on + strand at 1366.680 kb on - strand at 1366.961 kb on + strand, within LU632_RS07215 at 1366.961 kb on + strand, within LU632_RS07215 at 1366.961 kb on + strand, within LU632_RS07215 at 1366.965 kb on - strand, within LU632_RS07215 at 1367.065 kb on + strand, within LU632_RS07215
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 1,365,639 + +1.0 1,365,675 + +0.5 1,365,676 - -0.6 1,365,676 - -0.4 1,365,680 - +1.0 1,365,744 - +0.5 1,365,755 - -0.5 1,365,766 - -0.1 1,365,768 + +0.1 1,365,769 - +1.4 1,365,769 - -0.7 1,365,783 + -0.8 1,365,836 - -1.3 1,365,903 + +1.1 1,365,904 - +1.0 1,365,944 + +1.8 1,365,944 + +0.3 1,365,960 - -0.1 1,365,976 + LU632_RS07205 0.11 +0.9 1,365,977 - LU632_RS07205 0.11 +0.9 1,365,983 - LU632_RS07205 0.14 -1.1 1,365,995 - LU632_RS07205 0.21 +0.1 1,365,995 - LU632_RS07205 0.21 +0.9 1,366,058 - LU632_RS07205 0.53 -1.3 1,366,058 - LU632_RS07205 0.53 -1.3 1,366,058 - LU632_RS07205 0.53 -1.0 1,366,058 - LU632_RS07205 0.53 +2.2 1,366,085 + LU632_RS07205 0.67 -2.4 1,366,128 + LU632_RS07205 0.89 +0.7 1,366,128 + LU632_RS07205 0.89 -0.4 1,366,129 - LU632_RS07205 0.89 -2.1 1,366,129 - LU632_RS07205 0.89 -0.3 1,366,132 - -0.3 1,366,176 + -1.4 1,366,396 - LU632_RS07210 0.67 +1.1 1,366,397 + LU632_RS07210 0.68 -0.1 1,366,398 - LU632_RS07210 0.68 -1.8 1,366,398 - LU632_RS07210 0.68 +2.0 1,366,398 - LU632_RS07210 0.68 +1.4 1,366,490 - -1.5 1,366,524 + -1.1 1,366,542 + +2.2 1,366,657 + +1.0 1,366,680 - -0.3 1,366,961 + LU632_RS07215 0.50 -0.3 1,366,961 + LU632_RS07215 0.50 +1.0 1,366,961 + LU632_RS07215 0.50 -0.6 1,366,965 - LU632_RS07215 0.51 +0.7 1,367,065 + LU632_RS07215 0.73 +0.3
Or see this region's nucleotide sequence