Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07200

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,363,428	+		LU632_RS07195	0.27	-0.4
1,363,429	-		LU632_RS07195	0.27	-0.1
1,363,436	+		LU632_RS07195	0.28	-0.1
1,363,480	-		LU632_RS07195	0.31	+0.1
1,363,480	-		LU632_RS07195	0.31	+1.8
1,363,491	+		LU632_RS07195	0.32	-0.1
1,363,491	+		LU632_RS07195	0.32	-0.3
1,363,511	-		LU632_RS07195	0.34	-2.4
1,363,568	+		LU632_RS07195	0.39	-2.0
1,363,642	+		LU632_RS07195	0.46	-1.3
1,363,643	-		LU632_RS07195	0.46	-0.9
1,363,718	+		LU632_RS07195	0.52	-0.3
1,363,719	-		LU632_RS07195	0.52	+1.4
1,363,722	+		LU632_RS07195	0.53	-0.2
1,363,722	+		LU632_RS07195	0.53	-0.6
1,363,793	+		LU632_RS07195	0.59	+0.7
1,363,794	-		LU632_RS07195	0.59	+0.9
1,363,794	-		LU632_RS07195	0.59	-0.8
1,363,816	+		LU632_RS07195	0.61	-1.3
1,363,831	+		LU632_RS07195	0.62	+0.1
1,363,889	+		LU632_RS07195	0.67	+0.7
1,363,890	-		LU632_RS07195	0.67	-2.3
1,363,890	-		LU632_RS07195	0.67	+0.4
1,364,030	+		LU632_RS07195	0.79	+0.4
1,364,030	+		LU632_RS07195	0.79	-2.0
1,364,051	-		LU632_RS07195	0.81	+0.7
1,364,068	+		LU632_RS07195	0.83	+1.7
1,364,069	-		LU632_RS07195	0.83	-1.7
1,364,133	-		LU632_RS07195	0.88	-0.3
1,364,133	-		LU632_RS07195	0.88	-1.0
1,364,133	-		LU632_RS07195	0.88	-0.4
1,364,192	+				+0.1
1,364,238	+				+8.8
1,364,239	-				-0.3
1,364,270	-				+0.2
1,364,303	+				-0.1
1,364,356	-				-0.1
1,365,639	+				+1.0
1,365,675	+				+0.5
1,365,676	-				-0.6
1,365,676	-				-0.4
1,365,680	-				+1.0
1,365,744	-				+0.5
1,365,755	-				-0.5
1,365,766	-				-0.1
1,365,768	+				+0.1
1,365,769	-				+1.4
1,365,769	-				-0.7
1,365,783	+				-0.8
1,365,836	-				-1.3
1,365,903	+				+1.1
1,365,904	-				+1.0
1,365,944	+				+1.8
1,365,944	+				+0.3
1,365,960	-				-0.1
1,365,976	+		LU632_RS07205	0.11	+0.9
1,365,977	-		LU632_RS07205	0.11	+0.9
1,365,983	-		LU632_RS07205	0.14	-1.1
1,365,995	-		LU632_RS07205	0.21	+0.1
1,365,995	-		LU632_RS07205	0.21	+0.9
1,366,058	-		LU632_RS07205	0.53	-1.3
1,366,058	-		LU632_RS07205	0.53	-1.3
1,366,058	-		LU632_RS07205	0.53	-1.0
1,366,058	-		LU632_RS07205	0.53	+2.2
1,366,085	+		LU632_RS07205	0.67	-2.4
1,366,128	+		LU632_RS07205	0.89	+0.7
1,366,128	+		LU632_RS07205	0.89	-0.4
1,366,129	-		LU632_RS07205	0.89	-2.1
1,366,129	-		LU632_RS07205	0.89	-0.3
1,366,132	-				-0.3
1,366,176	+				-1.4
1,366,396	-		LU632_RS07210	0.67	+1.1
1,366,397	+		LU632_RS07210	0.68	-0.1
1,366,398	-		LU632_RS07210	0.68	-1.8
1,366,398	-		LU632_RS07210	0.68	+2.0
1,366,398	-		LU632_RS07210	0.68	+1.4
1,366,490	-				-1.5
1,366,524	+				-1.1
1,366,542	+				+2.2