Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07185

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,360,647	-		LU632_RS07180	0.35	+3.1
1,360,682	+		LU632_RS07180	0.38	+0.3
1,360,682	+		LU632_RS07180	0.38	+1.7
1,360,711	+		LU632_RS07180	0.40	+2.0
1,360,711	+		LU632_RS07180	0.40	-0.1
1,360,712	-		LU632_RS07180	0.40	-0.3
1,360,712	-		LU632_RS07180	0.40	-0.3
1,360,714	+		LU632_RS07180	0.40	+2.7
1,360,715	-		LU632_RS07180	0.40	-0.0
1,360,787	-		LU632_RS07180	0.46	+3.4
1,360,787	-		LU632_RS07180	0.46	+1.0
1,360,787	-		LU632_RS07180	0.46	-0.1
1,360,819	-		LU632_RS07180	0.49	+0.5
1,360,819	-		LU632_RS07180	0.49	-1.6
1,360,826	-		LU632_RS07180	0.49	-0.7
1,360,826	-		LU632_RS07180	0.49	-0.3
1,360,881	-		LU632_RS07180	0.54	-0.1
1,360,928	+		LU632_RS07180	0.57	-0.9
1,360,928	+		LU632_RS07180	0.57	-1.4
1,360,928	+		LU632_RS07180	0.57	+0.4
1,360,929	-		LU632_RS07180	0.57	-0.7
1,360,929	-		LU632_RS07180	0.57	-0.3
1,360,929	-		LU632_RS07180	0.57	-0.2
1,360,932	-		LU632_RS07180	0.58	-1.3
1,360,932	-		LU632_RS07180	0.58	-0.3
1,360,969	+		LU632_RS07180	0.60	-0.9
1,360,970	-		LU632_RS07180	0.61	+2.2
1,360,985	+		LU632_RS07180	0.62	-0.3
1,360,988	-		LU632_RS07180	0.62	+1.0
1,361,062	+		LU632_RS07180	0.68	-0.6
1,361,063	-		LU632_RS07180	0.68	-0.8
1,361,072	-		LU632_RS07180	0.69	+0.8
1,361,128	+		LU632_RS07180	0.73	+1.7
1,361,206	+		LU632_RS07180	0.79	-1.1
1,361,224	+		LU632_RS07180	0.81	+0.9
1,361,364	-				+0.7
1,361,368	+				-0.7
1,361,368	+				+1.0
1,361,368	+				+1.5
1,361,369	-				-1.1
1,361,379	+				+0.6
1,361,379	+				-0.5
1,361,460	+				+0.3
1,361,461	-				-1.1
1,361,594	+				+0.4
1,361,610	-				-2.3
1,361,622	+				-1.0
1,361,656	+		LU632_RS07185	0.10	-1.3
1,361,657	-		LU632_RS07185	0.11	-3.1
1,361,657	-		LU632_RS07185	0.11	-0.9
1,361,657	-		LU632_RS07185	0.11	-0.6
1,361,689	-		LU632_RS07185	0.13	-0.4
1,361,689	-		LU632_RS07185	0.13	+0.8
1,361,739	-		LU632_RS07185	0.18	-0.3
1,361,865	+		LU632_RS07185	0.29	-0.6
1,361,968	-		LU632_RS07185	0.38	-0.3
1,362,019	+		LU632_RS07185	0.42	-2.2
1,362,019	+		LU632_RS07185	0.42	-2.5
1,362,019	+		LU632_RS07185	0.42	+0.1
1,362,045	-		LU632_RS07185	0.44	-2.8
1,362,152	+		LU632_RS07185	0.53	+0.7
1,362,152	+		LU632_RS07185	0.53	-0.7
1,362,152	+		LU632_RS07185	0.53	+1.7
1,362,153	-		LU632_RS07185	0.54	+0.2
1,362,179	+		LU632_RS07185	0.56	+2.0
1,362,398	+		LU632_RS07185	0.75	+0.6
1,362,398	+		LU632_RS07185	0.75	-1.1
1,362,399	-		LU632_RS07185	0.75	-0.3
1,362,402	+		LU632_RS07185	0.75	-1.3
1,362,402	+		LU632_RS07185	0.75	+0.4
1,362,403	-		LU632_RS07185	0.75	-1.4
1,362,418	-		LU632_RS07185	0.77	-0.6
1,362,454	+		LU632_RS07185	0.80	-0.4
1,362,454	+		LU632_RS07185	0.80	+1.7
1,362,455	-		LU632_RS07185	0.80	+0.1
1,362,509	-		LU632_RS07185	0.84	+3.7
1,362,606	-				+1.1
1,362,606	-				+0.7
1,362,768	+				+0.1
1,362,901	-		LU632_RS07190	0.71	-1.0
1,362,901	-		LU632_RS07190	0.71	-1.3
1,362,910	+		LU632_RS07190	0.83	+0.1
1,362,911	-		LU632_RS07190	0.84	+0.1
1,362,915	-				-0.3
1,363,068	+				-1.7
1,363,068	+				+0.7
1,363,073	-				-0.7
1,363,073	-				+2.1
1,363,103	+				+1.7
1,363,110	+				-1.3
1,363,110	+				+1.7
1,363,111	-				-0.0
1,363,112	+				+1.5
1,363,112	+				-0.6
1,363,112	+				-0.6
1,363,112	+				+0.5
1,363,112	+				-0.3
1,363,113	-				-1.5
1,363,113	-				-1.9
1,363,113	-				-1.7
1,363,113	-				+1.7
1,363,114	+				-0.6
1,363,114	+				-0.7
1,363,114	+				+0.4
1,363,115	-				+1.6
1,363,115	-				-1.9
1,363,164	-				-1.1
1,363,164	-				+0.1
1,363,201	+				-0.4
1,363,267	+		LU632_RS07195	0.13	+1.7
1,363,297	+		LU632_RS07195	0.16	+0.3
1,363,338	+		LU632_RS07195	0.19	+1.0
1,363,338	+		LU632_RS07195	0.19	+0.8
1,363,338	+		LU632_RS07195	0.19	+0.9
1,363,339	-		LU632_RS07195	0.19	-0.1
1,363,339	-		LU632_RS07195	0.19	-0.5
1,363,339	-		LU632_RS07195	0.19	+1.4
1,363,339	-		LU632_RS07195	0.19	+0.4
1,363,428	+		LU632_RS07195	0.27	-0.4
1,363,429	-		LU632_RS07195	0.27	-0.1
1,363,436	+		LU632_RS07195	0.28	-0.1
1,363,480	-		LU632_RS07195	0.31	+0.1
1,363,480	-		LU632_RS07195	0.31	+1.8
1,363,491	+		LU632_RS07195	0.32	-0.1
1,363,491	+		LU632_RS07195	0.32	-0.3
1,363,511	-		LU632_RS07195	0.34	-2.4
1,363,568	+		LU632_RS07195	0.39	-2.0
1,363,642	+		LU632_RS07195	0.46	-1.3
1,363,643	-		LU632_RS07195	0.46	-0.9