Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07170

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,356,467	+		LU632_RS07165	0.16	-0.3
1,356,468	-		LU632_RS07165	0.16	+1.2
1,356,574	+		LU632_RS07165	0.25	+0.3
1,356,667	+		LU632_RS07165	0.33	+0.4
1,356,667	+		LU632_RS07165	0.33	+0.3
1,356,668	-		LU632_RS07165	0.33	-1.6
1,356,678	+		LU632_RS07165	0.34	+1.7
1,356,707	+		LU632_RS07165	0.36	+0.1
1,356,708	-		LU632_RS07165	0.36	-1.3
1,356,708	-		LU632_RS07165	0.36	+0.1
1,356,708	-		LU632_RS07165	0.36	-0.5
1,356,750	+		LU632_RS07165	0.40	-0.8
1,356,750	+		LU632_RS07165	0.40	+0.9
1,356,753	+		LU632_RS07165	0.40	-1.6
1,356,948	+		LU632_RS07165	0.57	+0.5
1,356,948	+		LU632_RS07165	0.57	-0.3
1,357,005	-		LU632_RS07165	0.61	+1.2
1,357,039	+		LU632_RS07165	0.64	+0.3
1,357,039	+		LU632_RS07165	0.64	-1.6
1,357,055	+		LU632_RS07165	0.66	+1.1
1,357,055	+		LU632_RS07165	0.66	+0.8
1,357,055	+		LU632_RS07165	0.66	-0.3
1,357,056	-		LU632_RS07165	0.66	-1.3
1,357,056	-		LU632_RS07165	0.66	+1.0
1,357,104	+		LU632_RS07165	0.70	+0.1
1,357,109	+		LU632_RS07165	0.70	+1.0
1,357,109	+		LU632_RS07165	0.70	+2.0
1,357,110	-		LU632_RS07165	0.70	+0.0
1,357,171	+		LU632_RS07165	0.76	+2.6
1,357,171	+		LU632_RS07165	0.76	-2.0
1,357,176	-		LU632_RS07165	0.76	+0.6
1,357,176	-		LU632_RS07165	0.76	+0.2
1,357,205	-		LU632_RS07165	0.78	-0.2
1,357,271	+		LU632_RS07165	0.84	+1.4
1,357,271	+		LU632_RS07165	0.84	-1.3
1,357,272	-		LU632_RS07165	0.84	-2.8
1,357,317	+		LU632_RS07165	0.88	+0.4
1,357,360	+				+0.7
1,357,361	-				+0.1
1,357,380	+				-0.6
1,357,381	-				-0.5
1,357,381	-				+0.2
1,357,382	+				+1.7
1,357,496	+				-1.2
1,357,541	+				+0.1
1,357,546	+				+1.0
1,357,604	+				-0.6
1,357,842	-		LU632_RS07170	0.17	+1.0
1,358,061	+		LU632_RS07170	0.27	-1.0
1,358,061	+		LU632_RS07170	0.27	-0.7
1,358,129	-		LU632_RS07170	0.30	+0.1
1,358,166	+		LU632_RS07170	0.32	+0.3
1,358,167	-		LU632_RS07170	0.32	+2.9
1,358,167	-		LU632_RS07170	0.32	-1.1
1,358,341	-		LU632_RS07170	0.39	+0.7
1,358,396	-		LU632_RS07170	0.42	+0.1
1,358,530	+		LU632_RS07170	0.48	-0.1
1,358,578	-		LU632_RS07170	0.50	-0.1
1,358,580	-		LU632_RS07170	0.50	-1.7
1,358,813	-		LU632_RS07170	0.60	-0.3
1,358,813	-		LU632_RS07170	0.60	-0.5
1,358,813	-		LU632_RS07170	0.60	-0.9
1,358,939	-		LU632_RS07170	0.66	+1.7
1,359,239	-		LU632_RS07170	0.79	+0.1
1,359,263	+		LU632_RS07170	0.80	-1.2
1,359,263	+		LU632_RS07170	0.80	+1.3
1,359,264	-		LU632_RS07170	0.80	-0.8
1,359,264	-		LU632_RS07170	0.80	+1.4
1,359,264	-		LU632_RS07170	0.80	+2.3
1,359,265	+		LU632_RS07170	0.80	-0.0
1,359,266	-		LU632_RS07170	0.80	-0.6
1,359,393	+		LU632_RS07170	0.86	+1.9
1,359,400	+		LU632_RS07170	0.86	-1.6
1,359,400	+		LU632_RS07170	0.86	-1.1
1,359,522	+				-0.0
1,359,537	-				-0.6
1,359,719	+				-2.2
1,359,729	+				+1.2
1,359,730	-				+0.2
1,359,736	-				-1.1
1,359,758	+				+0.5
1,359,793	+		LU632_RS07175	0.17	-1.6
1,359,799	+		LU632_RS07175	0.18	+1.8
1,359,865	+		LU632_RS07175	0.33	+0.3
1,359,873	-		LU632_RS07175	0.35	-0.5
1,359,899	-		LU632_RS07175	0.41	-0.3
1,359,909	+		LU632_RS07175	0.43	-2.4
1,359,912	-		LU632_RS07175	0.44	-1.8
1,359,949	+		LU632_RS07175	0.52	-0.5
1,359,992	-		LU632_RS07175	0.62	+0.7
1,360,244	+				-1.9
1,360,316	-				-0.2
1,360,500	-		LU632_RS07180	0.23	+0.1
1,360,500	-		LU632_RS07180	0.23	+1.7
1,360,523	+		LU632_RS07180	0.25	-0.0
1,360,524	-		LU632_RS07180	0.25	-0.5
1,360,524	-		LU632_RS07180	0.25	-0.4
1,360,524	-		LU632_RS07180	0.25	-0.3
1,360,647	-		LU632_RS07180	0.35	+3.1
1,360,682	+		LU632_RS07180	0.38	+0.3
1,360,682	+		LU632_RS07180	0.38	+1.7
1,360,711	+		LU632_RS07180	0.40	+2.0
1,360,711	+		LU632_RS07180	0.40	-0.1
1,360,712	-		LU632_RS07180	0.40	-0.3
1,360,712	-		LU632_RS07180	0.40	-0.3