Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06525

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,254,852	-		LU632_RS06515	0.58	-1.1
1,254,852	-		LU632_RS06515	0.58	+2.9
1,254,979	+		LU632_RS06515	0.70	-0.2
1,254,980	-		LU632_RS06515	0.71	-2.0
1,254,980	-		LU632_RS06515	0.71	+0.4
1,255,070	+		LU632_RS06515	0.80	+0.5
1,255,080	+		LU632_RS06515	0.81	-0.2
1,255,081	-		LU632_RS06515	0.81	+0.2
1,255,084	-		LU632_RS06515	0.81	-1.0
1,255,084	-		LU632_RS06515	0.81	+1.1
1,255,154	+		LU632_RS06515	0.88	-0.8
1,255,248	-				-0.4
1,255,250	-				+1.2
1,255,341	-				+0.3
1,255,374	+				+0.2
1,255,374	+				+1.9
1,255,374	+				+4.2
1,255,374	+				-0.7
1,255,374	+				+0.6
1,255,375	-				-0.8
1,255,375	-				-1.2
1,255,376	+				+0.6
1,255,376	+				-0.5
1,255,376	+				-0.6
1,255,377	-				-0.8
1,255,377	-				-2.3
1,255,378	+				+2.2
1,255,378	+				+0.8
1,255,379	-				-2.6
1,255,379	-				+0.1
1,255,379	-				-2.5
1,255,379	-				+0.6
1,255,379	-				+0.2
1,255,441	-				-1.2
1,255,449	-				+1.5
1,255,466	+		LU632_RS06520	0.12	+0.7
1,255,609	-		LU632_RS06520	0.54	-0.1
1,255,735	-				+4.7
1,255,846	+				+0.2
1,255,950	-		LU632_RS06525	0.10	+1.4
1,256,040	-		LU632_RS06525	0.18	-1.9
1,256,045	+		LU632_RS06525	0.18	-0.7
1,256,045	+		LU632_RS06525	0.18	-2.2
1,256,045	+		LU632_RS06525	0.18	+0.2
1,256,102	+		LU632_RS06525	0.23	-0.9
1,256,228	-		LU632_RS06525	0.33	-0.6
1,256,359	+		LU632_RS06525	0.44	+0.8
1,256,360	-		LU632_RS06525	0.44	-0.8
1,256,360	-		LU632_RS06525	0.44	-1.0
1,256,413	+		LU632_RS06525	0.48	-0.6
1,256,552	-		LU632_RS06525	0.59	+0.2
1,256,552	-		LU632_RS06525	0.59	+0.4
1,256,571	+		LU632_RS06525	0.61	-1.0
1,256,656	-		LU632_RS06525	0.68	+0.4
1,256,825	+		LU632_RS06525	0.81	-1.0
1,256,874	-		LU632_RS06525	0.85	-1.0
1,256,874	-		LU632_RS06525	0.85	+0.2
1,256,959	+				+0.8
1,256,959	+				-0.2
1,256,959	+				+0.8
1,256,960	-				+2.1
1,257,173	+				-1.2
1,257,313	+				-0.8
1,257,314	-				-3.6
1,257,317	+				+0.2
1,257,317	+				-1.6
1,257,326	+				+0.0
1,257,327	-				+1.9
1,257,332	+				+0.1
1,257,362	-				+0.6
1,257,366	-				+1.6
1,257,385	-				+1.4
1,257,423	+				-0.7
1,257,444	+				+1.9
1,257,444	+				+4.2
1,257,444	+				+2.9
1,257,444	+				+1.1
1,257,445	-				+3.0
1,257,445	-				+1.9
1,257,445	-				+1.2
1,257,505	+				+1.6
1,257,506	-				-0.8
1,257,510	+				+2.0
1,257,511	+				+2.4
1,257,511	-				+0.2
1,257,511	-				+2.6
1,257,511	-				-0.7
1,257,685	+		LU632_RS06530	0.23	+0.4
1,257,685	+		LU632_RS06530	0.23	-1.2
1,257,686	-		LU632_RS06530	0.23	+2.2
1,257,691	-		LU632_RS06530	0.24	+2.1
1,257,691	-		LU632_RS06530	0.24	+0.9
1,257,761	-		LU632_RS06530	0.30	+2.8
1,257,908	+		LU632_RS06530	0.42	+2.5
1,257,928	+		LU632_RS06530	0.44	-0.5
1,257,962	+		LU632_RS06530	0.47	+1.6
1,257,963	-		LU632_RS06530	0.47	+1.8
1,257,972	+		LU632_RS06530	0.47	+0.3
1,257,972	+		LU632_RS06530	0.47	+0.2
1,257,972	+		LU632_RS06530	0.47	-0.8
1,257,986	+		LU632_RS06530	0.49	+0.8
1,258,027	+		LU632_RS06530	0.52	+0.6
1,258,028	-		LU632_RS06530	0.52	+0.7