Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06405

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,230,340	+	cysJ	LU632_RS06400	0.45	+1.4
1,230,370	+	cysJ	LU632_RS06400	0.46	-0.8
1,230,592	+	cysJ	LU632_RS06400	0.59	+1.1
1,230,619	-	cysJ	LU632_RS06400	0.60	+0.2
1,230,619	-	cysJ	LU632_RS06400	0.60	-0.2
1,230,638	+	cysJ	LU632_RS06400	0.61	+1.0
1,230,695	-	cysJ	LU632_RS06400	0.64	+1.8
1,230,739	-	cysJ	LU632_RS06400	0.67	-0.4
1,230,841	-	cysJ	LU632_RS06400	0.73	+0.8
1,230,855	+	cysJ	LU632_RS06400	0.73	+0.1
1,230,856	-	cysJ	LU632_RS06400	0.73	-1.0
1,230,861	+	cysJ	LU632_RS06400	0.74	+0.7
1,231,051	-	cysJ	LU632_RS06400	0.84	-0.2
1,231,105	-	cysJ	LU632_RS06400	0.87	+0.8
1,231,111	+	cysJ	LU632_RS06400	0.88	+1.2
1,231,176	+				+2.5
1,231,176	+				+1.5
1,231,176	+				+0.1
1,231,177	-				-0.6
1,231,177	-				-1.7
1,231,177	-				-0.5
1,231,327	+				+3.7
1,231,413	+				+0.8
1,231,413	+				-2.0
1,231,502	+				-0.6
1,231,502	+				-0.3
1,231,503	-				-1.2
1,231,506	+	cysI	LU632_RS06405	0.10	-0.5
1,231,506	+	cysI	LU632_RS06405	0.10	-0.1
1,231,506	+	cysI	LU632_RS06405	0.10	-1.4
1,231,507	-	cysI	LU632_RS06405	0.10	-1.2
1,231,507	-	cysI	LU632_RS06405	0.10	+0.8
1,231,507	-	cysI	LU632_RS06405	0.10	-0.2
1,231,634	+	cysI	LU632_RS06405	0.18	-1.4
1,231,725	-	cysI	LU632_RS06405	0.23	-0.0
1,231,786	+	cysI	LU632_RS06405	0.26	+0.7
1,231,787	-	cysI	LU632_RS06405	0.27	+0.4
1,231,965	+	cysI	LU632_RS06405	0.37	-0.5
1,231,983	-	cysI	LU632_RS06405	0.38	+1.5
1,232,046	-	cysI	LU632_RS06405	0.42	+0.8
1,232,051	+	cysI	LU632_RS06405	0.42	+0.3
1,232,120	+	cysI	LU632_RS06405	0.46	-0.8
1,232,121	-	cysI	LU632_RS06405	0.46	-0.3
1,232,121	-	cysI	LU632_RS06405	0.46	-1.7
1,232,121	-	cysI	LU632_RS06405	0.46	-1.4
1,232,123	+	cysI	LU632_RS06405	0.46	-1.4
1,232,134	-	cysI	LU632_RS06405	0.47	-0.2
1,232,259	+	cysI	LU632_RS06405	0.54	-0.1
1,232,610	-	cysI	LU632_RS06405	0.74	-1.4
1,232,747	+	cysI	LU632_RS06405	0.82	-0.3
1,232,747	+	cysI	LU632_RS06405	0.82	+0.2
1,232,748	-	cysI	LU632_RS06405	0.83	-2.1
1,232,835	+	cysI	LU632_RS06405	0.88	-2.5
1,232,838	-	cysI	LU632_RS06405	0.88	-0.5
1,232,873	+	cysI	LU632_RS06405	0.90	+0.6
1,232,883	-				-0.5
1,232,921	+				+1.8
1,233,318	+		LU632_RS06410	0.35	-1.8
1,233,451	-		LU632_RS06410	0.53	-0.5
1,233,684	+		LU632_RS06410	0.85	-1.4
1,233,702	-		LU632_RS06410	0.88	+1.8
1,233,789	+				-0.2
1,233,867	-				+2.5
1,233,867	-				-0.5
1,233,867	-				-0.0
1,233,963	+				+0.1
1,234,008	-				-0.9