Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06390

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,227,246	-		LU632_RS06380	0.63	-1.2
1,227,268	+		LU632_RS06380	0.72	+0.5
1,227,269	-		LU632_RS06380	0.72	-0.0
1,227,338	-				+1.3
1,227,338	-				-0.4
1,227,398	+				+0.1
1,227,398	+				-0.4
1,227,399	-				+0.1
1,227,432	+				-0.9
1,227,432	+				-0.7
1,227,432	+				-1.5
1,227,432	+				-1.1
1,227,433	-				-0.1
1,227,433	-				-1.4
1,227,466	-		LU632_RS06385	0.11	+0.8
1,227,469	+		LU632_RS06385	0.12	-0.1
1,227,470	-		LU632_RS06385	0.12	-0.6
1,227,470	-		LU632_RS06385	0.12	-0.3
1,227,497	+		LU632_RS06385	0.16	-2.1
1,227,498	-		LU632_RS06385	0.16	-0.3
1,227,498	-		LU632_RS06385	0.16	+1.0
1,227,498	-		LU632_RS06385	0.16	-0.1
1,227,576	+		LU632_RS06385	0.27	+0.8
1,227,625	-		LU632_RS06385	0.35	+0.6
1,227,625	-		LU632_RS06385	0.35	+1.1
1,227,665	+		LU632_RS06385	0.41	-0.2
1,227,746	+		LU632_RS06385	0.53	-0.4
1,227,746	+		LU632_RS06385	0.53	-0.6
1,227,746	+		LU632_RS06385	0.53	+1.6
1,227,747	-		LU632_RS06385	0.53	-0.3
1,227,747	-		LU632_RS06385	0.53	-0.7
1,227,826	+		LU632_RS06385	0.64	+1.1
1,227,840	-		LU632_RS06385	0.66	-1.4
1,227,906	+		LU632_RS06385	0.76	+1.4
1,227,906	+		LU632_RS06385	0.76	+0.2
1,227,906	+		LU632_RS06385	0.76	-0.2
1,227,906	+		LU632_RS06385	0.76	-1.5
1,227,907	-		LU632_RS06385	0.76	-1.6
1,227,909	-		LU632_RS06385	0.77	+0.2
1,227,956	-		LU632_RS06385	0.83	-2.3
1,228,061	+				+0.8
1,228,061	+				+0.1
1,228,061	+				+1.3
1,228,062	-				+1.2
1,228,065	+				+0.5
1,228,065	-				+0.2
1,228,066	-				-1.5
1,228,094	-				+0.8
1,228,146	+				-0.2
1,228,234	+				-1.4
1,228,234	+				-1.3
1,228,235	-				+0.5
1,228,235	-				+0.2
1,228,413	+	queE	LU632_RS06390	0.34	-0.0
1,228,414	-	queE	LU632_RS06390	0.34	+1.1
1,228,414	-	queE	LU632_RS06390	0.34	-2.2
1,228,502	-	queE	LU632_RS06390	0.47	+1.1
1,228,552	-	queE	LU632_RS06390	0.55	+0.5
1,228,552	-	queE	LU632_RS06390	0.55	+3.8
1,228,602	+	queE	LU632_RS06390	0.62	+1.8
1,228,603	-	queE	LU632_RS06390	0.62	+0.2
1,228,603	-	queE	LU632_RS06390	0.62	+0.1
1,228,655	+	queE	LU632_RS06390	0.70	-0.8
1,228,655	+	queE	LU632_RS06390	0.70	-0.8
1,228,656	-	queE	LU632_RS06390	0.70	-0.6
1,228,786	-	queE	LU632_RS06390	0.90	-0.2
1,228,806	+				+1.1
1,228,834	-				+1.0
1,228,837	+				+0.2
1,228,842	+				+1.9
1,228,843	-				-0.3
1,228,845	+				-0.6
1,228,845	+				+1.4
1,229,009	-	queD	LU632_RS06395	0.38	-0.2
1,229,019	+	queD	LU632_RS06395	0.41	+1.2
1,229,019	+	queD	LU632_RS06395	0.41	+0.2
1,229,019	+	queD	LU632_RS06395	0.41	-2.2
1,229,020	-	queD	LU632_RS06395	0.41	+1.2
1,229,020	-	queD	LU632_RS06395	0.41	+3.0
1,229,020	-	queD	LU632_RS06395	0.41	+0.2
1,229,020	-	queD	LU632_RS06395	0.41	+0.5
1,229,020	-	queD	LU632_RS06395	0.41	-0.3
1,229,040	+	queD	LU632_RS06395	0.47	+1.1
1,229,040	+	queD	LU632_RS06395	0.47	+1.8
1,229,040	+	queD	LU632_RS06395	0.47	-0.8
1,229,040	+	queD	LU632_RS06395	0.47	-0.4
1,229,041	-	queD	LU632_RS06395	0.47	-0.2
1,229,043	-	queD	LU632_RS06395	0.47	-0.4
1,229,131	+	queD	LU632_RS06395	0.72	-0.4
1,229,132	-	queD	LU632_RS06395	0.72	+0.6
1,229,162	-	queD	LU632_RS06395	0.80	+0.5
1,229,162	-	queD	LU632_RS06395	0.80	-0.2
1,229,219	+				+0.2
1,229,396	-				-0.4
1,229,435	+				-1.7
1,229,451	+				+2.2
1,229,465	+				+3.3
1,229,466	-				+0.6
1,229,653	+				-0.5
1,229,653	+				-0.0
1,229,654	-				+0.4
1,229,724	-	cysJ	LU632_RS06400	0.10	-0.2
1,229,784	-	cysJ	LU632_RS06400	0.14	+0.5
1,229,799	+	cysJ	LU632_RS06400	0.14	-0.7
1,229,800	-	cysJ	LU632_RS06400	0.15	+0.7
1,229,829	+	cysJ	LU632_RS06400	0.16	+0.2