Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05870

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,112,591	+				-0.5
1,112,591	+				+0.2
1,112,595	+				-2.1
1,113,603	+				-2.0
1,113,651	+	zapA	LU632_RS05870	0.23	-0.9
1,113,652	-	zapA	LU632_RS05870	0.24	+0.1
1,113,673	-	zapA	LU632_RS05870	0.30	-1.0
1,113,802	-	zapA	LU632_RS05870	0.69	-2.0
1,113,802	-	zapA	LU632_RS05870	0.69	-0.3
1,113,853	+	zapA	LU632_RS05870	0.85	-0.9
1,113,882	+				+1.8
1,113,923	-				-1.0
1,113,923	-				-0.4
1,113,973	+				+1.0
1,113,973	+				-0.5
1,113,974	-				-0.2
1,113,974	-				-1.8
1,113,975	+				-0.8
1,113,976	-				-0.9
1,113,980	-				-1.0
1,114,032	+				-0.9
1,114,072	+				-0.3
1,114,072	+				+1.0
1,114,072	+				-0.2
1,114,073	-				+0.5
1,114,073	-				+0.5
1,114,073	-				+0.6
1,114,090	+				+0.3
1,114,102	+				-1.0
1,114,103	-				-2.0
1,114,168	+		LU632_RS05875	0.16	-0.3
1,114,168	+		LU632_RS05875	0.16	-1.1
1,114,169	-		LU632_RS05875	0.17	-1.5
1,114,182	+		LU632_RS05875	0.19	+2.4
1,114,204	+		LU632_RS05875	0.23	+0.2
1,114,205	-		LU632_RS05875	0.23	+0.0
1,114,223	+		LU632_RS05875	0.26	-2.5
1,114,224	-		LU632_RS05875	0.26	-0.8
1,114,265	-		LU632_RS05875	0.33	+0.6
1,114,309	-		LU632_RS05875	0.41	+0.8
1,114,337	+		LU632_RS05875	0.46	-0.5
1,114,338	-		LU632_RS05875	0.46	-0.1
1,114,366	-		LU632_RS05875	0.51	+0.7
1,114,435	+		LU632_RS05875	0.63	-1.1
1,114,449	+		LU632_RS05875	0.65	-1.6
1,114,449	+		LU632_RS05875	0.65	-0.6
1,114,450	-		LU632_RS05875	0.65	+0.5
1,114,563	-		LU632_RS05875	0.85	-2.3
1,114,594	+				-0.1
1,114,894	+	pepP	LU632_RS05880	0.16	+3.3
1,114,895	-	pepP	LU632_RS05880	0.16	-1.7