Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05190

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,004,529	+				+0.2
1,004,764	+		LU632_RS05185	0.21	+0.7
1,004,764	+		LU632_RS05185	0.21	-0.4
1,004,764	+		LU632_RS05185	0.21	+1.7
1,004,767	+		LU632_RS05185	0.22	-1.3
1,004,767	+		LU632_RS05185	0.22	+2.5
1,004,779	+		LU632_RS05185	0.24	-1.2
1,004,783	-		LU632_RS05185	0.25	+1.1
1,004,804	+		LU632_RS05185	0.29	-2.1
1,004,805	-		LU632_RS05185	0.29	+0.3
1,004,805	-		LU632_RS05185	0.29	-0.7
1,004,871	-		LU632_RS05185	0.41	-0.3
1,004,896	+		LU632_RS05185	0.46	-0.8
1,005,023	-		LU632_RS05185	0.70	-1.8
1,005,023	-		LU632_RS05185	0.70	-0.0
1,005,052	+		LU632_RS05185	0.75	+2.8
1,005,053	-		LU632_RS05185	0.75	-0.8
1,005,130	+		LU632_RS05185	0.90	-1.7
1,005,130	+		LU632_RS05185	0.90	-1.9
1,005,130	+		LU632_RS05185	0.90	-1.0
1,005,130	+		LU632_RS05185	0.90	+3.8
1,005,131	-				+0.2
1,005,204	+				-1.4
1,005,206	+				-1.7
1,005,207	-				+0.6
1,006,469	+				-0.0
1,006,522	-				-0.6
1,006,598	+		LU632_RS05195	0.12	-0.4
1,006,667	+		LU632_RS05195	0.34	-1.2
1,006,667	+		LU632_RS05195	0.34	+3.4
1,006,667	+		LU632_RS05195	0.34	+0.5
1,006,668	-		LU632_RS05195	0.34	+0.8
1,006,668	-		LU632_RS05195	0.34	-0.8
1,006,673	+		LU632_RS05195	0.36	+1.0
1,006,697	-		LU632_RS05195	0.43	-0.2
1,006,763	+		LU632_RS05195	0.64	+0.1
1,006,764	-		LU632_RS05195	0.64	-0.9
1,006,822	-		LU632_RS05195	0.82	-0.8
1,006,928	-				-0.8
1,007,061	+		LU632_RS05200	0.18	-0.2
1,007,092	+		LU632_RS05200	0.23	-0.6
1,007,152	+		LU632_RS05200	0.33	-0.3
1,007,169	-		LU632_RS05200	0.35	+0.6
1,007,171	-		LU632_RS05200	0.36	-1.2
1,007,172	+		LU632_RS05200	0.36	+1.1
1,007,217	+		LU632_RS05200	0.43	-1.5
1,007,284	+		LU632_RS05200	0.53	+1.3
1,007,328	+		LU632_RS05200	0.60	-0.1
1,007,338	-		LU632_RS05200	0.62	-1.2
1,007,370	+		LU632_RS05200	0.67	+0.5
1,007,405	-		LU632_RS05200	0.73	+0.1
1,007,408	+		LU632_RS05200	0.73	+3.8
1,007,409	-		LU632_RS05200	0.73	+1.8