Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05185

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
1,003,690	+				+0.3
1,003,697	-				-0.4
1,003,702	+				-1.3
1,003,703	-				-0.7
1,003,770	+				+1.1
1,003,770	+				+0.7
1,003,771	-				+0.2
1,003,771	-				+0.2
1,003,841	-				+2.3
1,003,857	+				-0.5
1,004,001	-	tnpA	LU632_RS05175	0.39	+0.6
1,004,005	-	tnpA	LU632_RS05175	0.40	-0.4
1,004,088	+	tnpA	LU632_RS05175	0.71	+1.6
1,004,114	+	tnpA	LU632_RS05175	0.80	+0.5
1,004,114	+	tnpA	LU632_RS05175	0.80	-1.9
1,004,114	+	tnpA	LU632_RS05175	0.80	-1.0
1,004,115	-	tnpA	LU632_RS05175	0.81	-1.5
1,004,138	+	tnpA	LU632_RS05175	0.89	-1.6
1,004,147	+				+2.0
1,004,148	-				-1.0
1,004,196	+		LU632_RS05180	0.15	-0.2
1,004,252	+		LU632_RS05180	0.37	+0.1
1,004,253	-		LU632_RS05180	0.38	+1.4
1,004,327	+		LU632_RS05180	0.67	-0.8
1,004,529	+				+0.2
1,004,764	+		LU632_RS05185	0.21	+0.7
1,004,764	+		LU632_RS05185	0.21	-0.4
1,004,764	+		LU632_RS05185	0.21	+1.7
1,004,767	+		LU632_RS05185	0.22	-1.3
1,004,767	+		LU632_RS05185	0.22	+2.5
1,004,779	+		LU632_RS05185	0.24	-1.2
1,004,783	-		LU632_RS05185	0.25	+1.1
1,004,804	+		LU632_RS05185	0.29	-2.1
1,004,805	-		LU632_RS05185	0.29	+0.3
1,004,805	-		LU632_RS05185	0.29	-0.7
1,004,871	-		LU632_RS05185	0.41	-0.3
1,004,896	+		LU632_RS05185	0.46	-0.8
1,005,023	-		LU632_RS05185	0.70	-1.8
1,005,023	-		LU632_RS05185	0.70	-0.0
1,005,052	+		LU632_RS05185	0.75	+2.8
1,005,053	-		LU632_RS05185	0.75	-0.8
1,005,130	+		LU632_RS05185	0.90	-1.7
1,005,130	+		LU632_RS05185	0.90	-1.9
1,005,130	+		LU632_RS05185	0.90	-1.0
1,005,130	+		LU632_RS05185	0.90	+3.8
1,005,131	-				+0.2
1,005,204	+				-1.4
1,005,206	+				-1.7
1,005,207	-				+0.6