Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04880 and LU632_RS04885 are separated by 54 nucleotides LU632_RS04885 and LU632_RS04890 are separated by 650 nucleotides LU632_RS04890 and LU632_RS04895 are separated by 77 nucleotides LU632_RS04895 and LU632_RS04900 are separated by 12 nucleotides LU632_RS04900 and LU632_RS04905 are separated by 13 nucleotides
LU632_RS04880: LU632_RS04880 - DNA topoisomerase III, at 953,713 to 955,435
_RS04880
LU632_RS04885: LU632_RS04885 - topoisomerase DNA-binding C4 zinc finger domain-containing protein, at 955,490 to 955,759
_RS04885
LU632_RS04890: LU632_RS04890 - STY4534 family ICE replication protein, at 956,410 to 956,874
_RS04890
LU632_RS04895: LU632_RS04895 - hypothetical protein, at 956,952 to 957,155
_RS04895
LU632_RS04900: LU632_RS04900 - single-stranded DNA-binding protein, at 957,168 to 957,757
_RS04900
LU632_RS04905: LU632_RS04905 - DUF4160 domain-containing protein, at 957,771 to 958,007
_RS04905
Position (kb) 956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 955.457 kb on - strand at 955.483 kb on + strand at 955.588 kb on + strand, within LU632_RS04885 at 955.589 kb on - strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.639 kb on + strand, within LU632_RS04885 at 955.640 kb on - strand, within LU632_RS04885 at 955.657 kb on + strand, within LU632_RS04885 at 955.771 kb on - strand at 955.783 kb on + strand at 955.784 kb on - strand at 955.784 kb on - strand at 955.798 kb on + strand at 955.995 kb on - strand at 956.108 kb on + strand at 956.108 kb on + strand at 956.207 kb on - strand at 956.219 kb on - strand at 956.219 kb on - strand at 956.265 kb on + strand at 956.319 kb on + strand at 956.378 kb on + strand at 956.379 kb on - strand at 956.383 kb on + strand at 956.390 kb on - strand at 956.424 kb on + strand at 956.446 kb on + strand at 956.494 kb on + strand, within LU632_RS04890 at 956.569 kb on + strand, within LU632_RS04890 at 956.569 kb on + strand, within LU632_RS04890 at 956.569 kb on + strand, within LU632_RS04890 at 956.570 kb on - strand, within LU632_RS04890 at 956.706 kb on + strand, within LU632_RS04890 at 956.759 kb on + strand, within LU632_RS04890 at 956.781 kb on - strand, within LU632_RS04890 at 956.797 kb on + strand, within LU632_RS04890 at 956.798 kb on - strand, within LU632_RS04890 at 956.798 kb on - strand, within LU632_RS04890 at 956.799 kb on + strand, within LU632_RS04890 at 956.799 kb on + strand, within LU632_RS04890 at 956.800 kb on - strand, within LU632_RS04890 at 956.839 kb on - strand at 956.936 kb on - strand at 956.939 kb on - strand at 957.033 kb on + strand, within LU632_RS04895 at 957.033 kb on + strand, within LU632_RS04895 at 957.034 kb on - strand, within LU632_RS04895 at 957.034 kb on - strand, within LU632_RS04895 at 957.034 kb on - strand, within LU632_RS04895 at 957.034 kb on - strand, within LU632_RS04895 at 957.036 kb on - strand, within LU632_RS04895 at 957.084 kb on + strand, within LU632_RS04895 at 957.084 kb on + strand, within LU632_RS04895 at 957.084 kb on + strand, within LU632_RS04895 at 957.234 kb on + strand, within LU632_RS04900 at 957.234 kb on + strand, within LU632_RS04900 at 957.236 kb on + strand, within LU632_RS04900 at 957.236 kb on + strand, within LU632_RS04900 at 957.237 kb on - strand, within LU632_RS04900 at 957.248 kb on + strand, within LU632_RS04900 at 957.402 kb on + strand, within LU632_RS04900 at 957.402 kb on + strand, within LU632_RS04900 at 957.402 kb on + strand, within LU632_RS04900 at 957.402 kb on + strand, within LU632_RS04900 at 957.403 kb on - strand, within LU632_RS04900 at 957.403 kb on - strand, within LU632_RS04900 at 957.403 kb on - strand, within LU632_RS04900 at 957.403 kb on - strand, within LU632_RS04900 at 957.419 kb on - strand, within LU632_RS04900 at 957.419 kb on - strand, within LU632_RS04900 at 957.419 kb on - strand, within LU632_RS04900 at 957.419 kb on - strand, within LU632_RS04900 at 957.419 kb on - strand, within LU632_RS04900 at 957.428 kb on + strand, within LU632_RS04900 at 957.428 kb on + strand, within LU632_RS04900 at 957.428 kb on + strand, within LU632_RS04900 at 957.460 kb on - strand, within LU632_RS04900 at 957.465 kb on - strand, within LU632_RS04900 at 957.744 kb on + strand at 957.767 kb on + strand at 957.768 kb on - strand at 957.768 kb on - strand at 957.777 kb on - strand at 957.781 kb on + strand at 957.782 kb on - strand at 957.782 kb on - strand at 957.808 kb on - strand, within LU632_RS04905 at 957.848 kb on + strand, within LU632_RS04905
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 955,457 - +1.4 955,483 + +2.8 955,588 + LU632_RS04885 0.36 -0.1 955,589 - LU632_RS04885 0.37 -1.0 955,639 + LU632_RS04885 0.55 +2.3 955,639 + LU632_RS04885 0.55 -1.2 955,639 + LU632_RS04885 0.55 -0.1 955,639 + LU632_RS04885 0.55 -1.1 955,639 + LU632_RS04885 0.55 -1.6 955,639 + LU632_RS04885 0.55 +0.1 955,640 - LU632_RS04885 0.56 +3.0 955,657 + LU632_RS04885 0.62 -1.4 955,771 - -0.7 955,783 + -0.8 955,784 - -0.9 955,784 - -0.1 955,798 + +0.2 955,995 - -1.5 956,108 + -0.4 956,108 + -0.2 956,207 - +0.0 956,219 - -1.1 956,219 - +0.4 956,265 + +1.0 956,319 + -1.7 956,378 + -2.6 956,379 - +1.7 956,383 + -1.0 956,390 - +0.1 956,424 + -0.5 956,446 + -2.2 956,494 + LU632_RS04890 0.18 -1.4 956,569 + LU632_RS04890 0.34 -0.2 956,569 + LU632_RS04890 0.34 -0.2 956,569 + LU632_RS04890 0.34 -0.9 956,570 - LU632_RS04890 0.34 +1.6 956,706 + LU632_RS04890 0.64 -0.4 956,759 + LU632_RS04890 0.75 +1.0 956,781 - LU632_RS04890 0.80 +0.8 956,797 + LU632_RS04890 0.83 -0.9 956,798 - LU632_RS04890 0.83 +2.1 956,798 - LU632_RS04890 0.83 -1.9 956,799 + LU632_RS04890 0.84 -3.1 956,799 + LU632_RS04890 0.84 -0.7 956,800 - LU632_RS04890 0.84 +0.3 956,839 - -2.1 956,936 - -0.4 956,939 - -3.0 957,033 + LU632_RS04895 0.40 +0.2 957,033 + LU632_RS04895 0.40 +1.5 957,034 - LU632_RS04895 0.40 +0.3 957,034 - LU632_RS04895 0.40 +1.9 957,034 - LU632_RS04895 0.40 +0.3 957,034 - LU632_RS04895 0.40 -0.1 957,036 - LU632_RS04895 0.41 +2.2 957,084 + LU632_RS04895 0.65 +0.1 957,084 + LU632_RS04895 0.65 -0.2 957,084 + LU632_RS04895 0.65 +0.2 957,234 + LU632_RS04900 0.11 -2.2 957,234 + LU632_RS04900 0.11 -1.9 957,236 + LU632_RS04900 0.12 +0.4 957,236 + LU632_RS04900 0.12 +0.8 957,237 - LU632_RS04900 0.12 +0.6 957,248 + LU632_RS04900 0.14 +0.2 957,402 + LU632_RS04900 0.40 +0.1 957,402 + LU632_RS04900 0.40 -0.3 957,402 + LU632_RS04900 0.40 -1.2 957,402 + LU632_RS04900 0.40 +0.8 957,403 - LU632_RS04900 0.40 +0.1 957,403 - LU632_RS04900 0.40 +2.2 957,403 - LU632_RS04900 0.40 -2.1 957,403 - LU632_RS04900 0.40 +0.6 957,419 - LU632_RS04900 0.43 -0.2 957,419 - LU632_RS04900 0.43 -2.0 957,419 - LU632_RS04900 0.43 -0.4 957,419 - LU632_RS04900 0.43 +1.7 957,419 - LU632_RS04900 0.43 +1.3 957,428 + LU632_RS04900 0.44 +1.6 957,428 + LU632_RS04900 0.44 -0.8 957,428 + LU632_RS04900 0.44 +0.7 957,460 - LU632_RS04900 0.49 -1.5 957,465 - LU632_RS04900 0.50 +0.4 957,744 + -0.4 957,767 + +0.2 957,768 - +0.2 957,768 - +0.6 957,777 - +2.2 957,781 + -1.2 957,782 - +2.3 957,782 - -0.2 957,808 - LU632_RS04905 0.16 +0.1 957,848 + LU632_RS04905 0.32 -2.0
Or see this region's nucleotide sequence