Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04510 and LU632_RS04515 are separated by 81 nucleotides LU632_RS04515 and LU632_RS04520 are separated by 109 nucleotides LU632_RS04520 and LU632_RS04525 are separated by 376 nucleotides
LU632_RS04510: LU632_RS04510 - IS91 family transposase, at 885,733 to 886,956
_RS04510
LU632_RS04515: LU632_RS04515 - DUF4158 domain-containing protein, at 887,038 to 887,541
_RS04515
LU632_RS04520: LU632_RS04520 - hypothetical protein, at 887,651 to 887,941
_RS04520
LU632_RS04525: LU632_RS04525 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 888,318 to 888,572
_RS04525
Position (kb) 887
888 Strain fitness (log2 ratio) -2
-1
0
1
2 at 887.037 kb on + strand at 887.627 kb on + strand at 888.166 kb on + strand at 888.166 kb on + strand at 888.166 kb on + strand at 888.166 kb on + strand at 888.167 kb on - strand at 888.167 kb on - strand at 888.167 kb on - strand at 888.173 kb on + strand at 888.173 kb on + strand at 888.174 kb on - strand at 888.177 kb on + strand at 888.178 kb on - strand at 888.190 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 887,037 + -0.2 887,627 + +0.4 888,166 + -0.3 888,166 + -1.0 888,166 + -2.2 888,166 + +1.5 888,167 - +1.6 888,167 - +0.9 888,167 - -0.2 888,173 + -2.1 888,173 + +2.3 888,174 - -2.0 888,177 + +0.5 888,178 - +0.9 888,190 + +2.3
Or see this region's nucleotide sequence