Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04285

Experiment: plant=Melon; plant sample=M2; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04275 and araD overlap by 4 nucleotidesaraD and LU632_RS04285 are separated by 89 nucleotidesLU632_RS04285 and LU632_RS04290 are separated by 582 nucleotides LU632_RS04275: LU632_RS04275 - L-ribulose-5-phosphate 3-epimerase, at 850,343 to 851,200 _RS04275 LU632_RS04280: araD - L-ribulose-5-phosphate 4-epimerase, at 851,197 to 851,895 araD LU632_RS04285: LU632_RS04285 - IS5 family transposase, at 851,985 to 852,801 _RS04285 LU632_RS04290: LU632_RS04290 - hypothetical protein, at 853,384 to 854,223 _RS04290 Position (kb) 851 852 853Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 851.256 kb on + strandat 851.256 kb on + strandat 851.257 kb on - strandat 851.257 kb on - strandat 851.341 kb on + strand, within araDat 851.364 kb on + strand, within araDat 851.364 kb on + strand, within araDat 851.365 kb on - strand, within araDat 851.365 kb on - strand, within araDat 851.399 kb on + strand, within araDat 851.485 kb on - strand, within araDat 851.485 kb on - strand, within araDat 851.621 kb on - strand, within araDat 851.626 kb on + strand, within araDat 851.627 kb on - strand, within araDat 851.627 kb on - strand, within araDat 851.647 kb on - strand, within araDat 851.648 kb on + strand, within araDat 851.649 kb on - strand, within araDat 851.649 kb on - strand, within araDat 851.670 kb on + strand, within araDat 851.730 kb on + strand, within araDat 851.762 kb on + strand, within araDat 851.763 kb on - strand, within araDat 851.782 kb on + strand, within araDat 851.782 kb on + strand, within araDat 851.782 kb on + strand, within araDat 851.783 kb on - strand, within araDat 851.783 kb on - strand, within araDat 851.783 kb on - strand, within araDat 851.783 kb on - strand, within araDat 851.783 kb on - strand, within araDat 851.855 kb on - strandat 851.882 kb on - strandat 851.896 kb on + strandat 851.899 kb on + strandat 852.832 kb on + strandat 852.832 kb on + strandat 852.832 kb on + strandat 852.832 kb on + strandat 852.832 kb on + strandat 852.832 kb on + strandat 852.834 kb on + strandat 852.961 kb on - strandat 853.049 kb on + strandat 853.165 kb on + strandat 853.165 kb on + strandat 853.165 kb on + strandat 853.169 kb on + strandat 853.169 kb on + strandat 853.170 kb on - strandat 853.170 kb on - strandat 853.743 kb on + strand, within LU632_RS04290at 853.744 kb on - strand, within LU632_RS04290at 853.771 kb on + strand, within LU632_RS04290at 853.772 kb on - strand, within LU632_RS04290

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2
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851,256 + -1.1
851,256 + -1.0
851,257 - -2.1
851,257 - -1.3
851,341 + araD LU632_RS04280 0.21 -1.0
851,364 + araD LU632_RS04280 0.24 -0.4
851,364 + araD LU632_RS04280 0.24 -1.7
851,365 - araD LU632_RS04280 0.24 -0.9
851,365 - araD LU632_RS04280 0.24 -1.0
851,399 + araD LU632_RS04280 0.29 +1.3
851,485 - araD LU632_RS04280 0.41 -1.2
851,485 - araD LU632_RS04280 0.41 +3.2
851,621 - araD LU632_RS04280 0.61 +2.1
851,626 + araD LU632_RS04280 0.61 -0.3
851,627 - araD LU632_RS04280 0.62 -1.5
851,627 - araD LU632_RS04280 0.62 +1.4
851,647 - araD LU632_RS04280 0.64 +0.7
851,648 + araD LU632_RS04280 0.65 -1.4
851,649 - araD LU632_RS04280 0.65 -1.8
851,649 - araD LU632_RS04280 0.65 +1.8
851,670 + araD LU632_RS04280 0.68 -1.0
851,730 + araD LU632_RS04280 0.76 -1.8
851,762 + araD LU632_RS04280 0.81 +1.0
851,763 - araD LU632_RS04280 0.81 -1.1
851,782 + araD LU632_RS04280 0.84 -0.4
851,782 + araD LU632_RS04280 0.84 -0.2
851,782 + araD LU632_RS04280 0.84 -2.0
851,783 - araD LU632_RS04280 0.84 -1.8
851,783 - araD LU632_RS04280 0.84 -1.6
851,783 - araD LU632_RS04280 0.84 -0.1
851,783 - araD LU632_RS04280 0.84 -0.8
851,783 - araD LU632_RS04280 0.84 +0.7
851,855 - -0.8
851,882 - -1.6
851,896 + +2.0
851,899 + -0.2
852,832 + +1.2
852,832 + -0.8
852,832 + -0.7
852,832 + +0.1
852,832 + +0.1
852,832 + -1.6
852,834 + +0.8
852,961 - -0.7
853,049 + -1.6
853,165 + +1.2
853,165 + -1.4
853,165 + -0.7
853,169 + -0.1
853,169 + +1.3
853,170 - -0.3
853,170 - +2.3
853,743 + LU632_RS04290 0.43 -1.8
853,744 - LU632_RS04290 0.43 -3.0
853,771 + LU632_RS04290 0.46 +1.1
853,772 - LU632_RS04290 0.46 -1.2

Or see this region's nucleotide sequence