Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tagH and LU632_RS03845 overlap by 1 nucleotides LU632_RS03845 and LU632_RS03850 are separated by 18 nucleotides LU632_RS03850 and LU632_RS03855 are separated by 25 nucleotides LU632_RS03855 and tssE overlap by 8 nucleotides
LU632_RS03840: tagH - type VI secretion system-associated FHA domain protein TagH, at 764,709 to 766,553
tagH
LU632_RS03845: LU632_RS03845 - protein phosphatase 2C domain-containing protein, at 766,553 to 767,347
_RS03845
LU632_RS03850: LU632_RS03850 - hypothetical protein, at 767,366 to 768,418
_RS03850
LU632_RS03855: LU632_RS03855 - protein of avirulence locus ImpE, at 768,444 to 769,268
_RS03855
LU632_RS03860: tssE - type VI secretion system baseplate subunit TssE, at 769,261 to 769,836
tssE
Position (kb) 767
768
769 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 766.500 kb on + strand at 766.558 kb on + strand at 766.559 kb on - strand at 766.601 kb on - strand at 766.871 kb on + strand, within LU632_RS03845 at 766.913 kb on + strand, within LU632_RS03845 at 766.914 kb on - strand, within LU632_RS03845 at 766.932 kb on - strand, within LU632_RS03845 at 767.021 kb on + strand, within LU632_RS03845 at 767.147 kb on - strand, within LU632_RS03845 at 767.147 kb on - strand, within LU632_RS03845 at 767.147 kb on - strand, within LU632_RS03845 at 767.165 kb on - strand, within LU632_RS03845 at 767.171 kb on - strand, within LU632_RS03845 at 767.253 kb on - strand, within LU632_RS03845 at 767.346 kb on - strand at 767.365 kb on + strand at 767.365 kb on + strand at 767.372 kb on + strand at 767.372 kb on + strand at 767.373 kb on - strand at 767.401 kb on + strand at 767.402 kb on - strand at 767.612 kb on - strand, within LU632_RS03850 at 767.928 kb on - strand, within LU632_RS03850 at 767.929 kb on + strand, within LU632_RS03850 at 767.979 kb on - strand, within LU632_RS03850 at 767.979 kb on - strand, within LU632_RS03850 at 768.046 kb on + strand, within LU632_RS03850 at 768.046 kb on + strand, within LU632_RS03850 at 768.047 kb on - strand, within LU632_RS03850 at 768.047 kb on - strand, within LU632_RS03850 at 768.246 kb on + strand, within LU632_RS03850 at 768.321 kb on - strand at 768.416 kb on + strand at 768.416 kb on + strand at 768.416 kb on + strand at 768.417 kb on - strand at 768.417 kb on - strand at 768.604 kb on + strand, within LU632_RS03855 at 768.605 kb on - strand, within LU632_RS03855 at 768.605 kb on - strand, within LU632_RS03855 at 768.935 kb on + strand, within LU632_RS03855 at 768.951 kb on + strand, within LU632_RS03855 at 768.951 kb on + strand, within LU632_RS03855 at 768.951 kb on + strand, within LU632_RS03855 at 769.031 kb on + strand, within LU632_RS03855 at 769.031 kb on + strand, within LU632_RS03855 at 769.032 kb on - strand, within LU632_RS03855 at 769.032 kb on - strand, within LU632_RS03855 at 769.032 kb on - strand, within LU632_RS03855 at 769.032 kb on - strand, within LU632_RS03855 at 769.118 kb on + strand, within LU632_RS03855 at 769.266 kb on + strand at 769.326 kb on + strand, within tssE at 769.326 kb on + strand, within tssE at 769.392 kb on + strand, within tssE
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 766,500 + +0.5 766,558 + -0.0 766,559 - +3.1 766,601 - -1.7 766,871 + LU632_RS03845 0.40 -1.4 766,913 + LU632_RS03845 0.45 +0.5 766,914 - LU632_RS03845 0.45 +2.8 766,932 - LU632_RS03845 0.48 -1.8 767,021 + LU632_RS03845 0.59 -0.8 767,147 - LU632_RS03845 0.75 -0.7 767,147 - LU632_RS03845 0.75 +1.4 767,147 - LU632_RS03845 0.75 -0.5 767,165 - LU632_RS03845 0.77 +0.3 767,171 - LU632_RS03845 0.78 -0.2 767,253 - LU632_RS03845 0.88 -0.5 767,346 - +0.8 767,365 + +2.8 767,365 + +2.9 767,372 + +0.4 767,372 + +0.6 767,373 - -0.5 767,401 + -0.7 767,402 - +1.6 767,612 - LU632_RS03850 0.23 -0.2 767,928 - LU632_RS03850 0.53 +0.2 767,929 + LU632_RS03850 0.53 -0.1 767,979 - LU632_RS03850 0.58 +0.7 767,979 - LU632_RS03850 0.58 +0.2 768,046 + LU632_RS03850 0.65 +0.8 768,046 + LU632_RS03850 0.65 -2.1 768,047 - LU632_RS03850 0.65 +0.1 768,047 - LU632_RS03850 0.65 +1.5 768,246 + LU632_RS03850 0.84 -0.7 768,321 - -0.2 768,416 + +0.6 768,416 + +0.8 768,416 + -1.6 768,417 - +0.2 768,417 - -1.5 768,604 + LU632_RS03855 0.19 +3.3 768,605 - LU632_RS03855 0.20 +0.2 768,605 - LU632_RS03855 0.20 +0.4 768,935 + LU632_RS03855 0.60 +0.8 768,951 + LU632_RS03855 0.61 -1.0 768,951 + LU632_RS03855 0.61 -0.4 768,951 + LU632_RS03855 0.61 +0.3 769,031 + LU632_RS03855 0.71 -0.7 769,031 + LU632_RS03855 0.71 +2.5 769,032 - LU632_RS03855 0.71 +2.1 769,032 - LU632_RS03855 0.71 +0.5 769,032 - LU632_RS03855 0.71 +0.6 769,032 - LU632_RS03855 0.71 +0.5 769,118 + LU632_RS03855 0.82 -0.3 769,266 + +0.0 769,326 + tssE LU632_RS03860 0.11 -0.1 769,326 + tssE LU632_RS03860 0.11 -0.3 769,392 + tssE LU632_RS03860 0.23 -1.0
Or see this region's nucleotide sequence