Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03595 and lysB overlap by 4 nucleotides lysB and lysC overlap by 98 nucleotides lysC and LU632_RS03610 overlap by 38 nucleotides LU632_RS03610 and LU632_RS03615 overlap by 8 nucleotides LU632_RS03615 and LU632_RS03620 are separated by 68 nucleotides
LU632_RS03595: LU632_RS03595 - lysozyme, at 725,530 to 726,039
_RS03595
LU632_RS03600: lysB - Rz-like lysis system protein LysB, at 726,036 to 726,449
lysB
LU632_RS03605: lysC - Rz1-like lysis system protein LysC, at 726,352 to 726,594
lysC
LU632_RS03610: LU632_RS03610 - phage tail protein, at 726,557 to 727,024
_RS03610
LU632_RS03615: LU632_RS03615 - phage virion morphogenesis protein, at 727,017 to 727,466
_RS03615
LU632_RS03620: LU632_RS03620 - phage baseplate assembly protein V, at 727,535 to 728,170
_RS03620
Position (kb) 726
727
728 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 725.905 kb on + strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.906 kb on - strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 725.959 kb on + strand, within LU632_RS03595 at 726.043 kb on + strand at 726.043 kb on + strand at 726.044 kb on - strand at 726.110 kb on - strand, within lysB at 726.299 kb on - strand, within lysB at 726.302 kb on + strand, within lysB at 726.330 kb on + strand, within lysB at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.699 kb on - strand, within LU632_RS03610 at 726.793 kb on + strand, within LU632_RS03610 at 726.835 kb on + strand, within LU632_RS03610 at 726.836 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.927 kb on - strand, within LU632_RS03610 at 726.935 kb on + strand, within LU632_RS03610 at 726.935 kb on + strand, within LU632_RS03610 at 726.936 kb on - strand, within LU632_RS03610 at 726.986 kb on + strand at 726.987 kb on - strand at 726.987 kb on - strand at 727.009 kb on + strand at 727.009 kb on + strand at 727.010 kb on - strand at 727.027 kb on + strand at 727.260 kb on - strand, within LU632_RS03615 at 727.400 kb on - strand, within LU632_RS03615 at 727.468 kb on + strand at 727.468 kb on + strand at 727.469 kb on - strand at 727.534 kb on + strand at 727.540 kb on + strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.546 kb on - strand at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.661 kb on - strand, within LU632_RS03620 at 727.869 kb on - strand, within LU632_RS03620 at 727.893 kb on + strand, within LU632_RS03620
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 725,905 + LU632_RS03595 0.74 +0.8 725,906 - LU632_RS03595 0.74 +1.2 725,906 - LU632_RS03595 0.74 +1.1 725,906 - LU632_RS03595 0.74 -3.3 725,959 + LU632_RS03595 0.84 +0.5 725,959 + LU632_RS03595 0.84 +4.5 726,043 + -1.2 726,043 + +0.1 726,044 - -0.2 726,110 - lysB LU632_RS03600 0.18 -1.6 726,299 - lysB LU632_RS03600 0.64 +1.3 726,302 + lysB LU632_RS03600 0.64 +0.2 726,330 + lysB LU632_RS03600 0.71 +2.5 726,699 - LU632_RS03610 0.30 -0.2 726,699 - LU632_RS03610 0.30 -0.8 726,699 - LU632_RS03610 0.30 +0.4 726,699 - LU632_RS03610 0.30 -1.0 726,793 + LU632_RS03610 0.50 +1.0 726,835 + LU632_RS03610 0.59 +0.4 726,836 - LU632_RS03610 0.60 -0.8 726,927 - LU632_RS03610 0.79 +1.1 726,927 - LU632_RS03610 0.79 -0.7 726,927 - LU632_RS03610 0.79 +1.3 726,935 + LU632_RS03610 0.81 -0.4 726,935 + LU632_RS03610 0.81 -0.1 726,936 - LU632_RS03610 0.81 -0.7 726,986 + -0.0 726,987 - -0.4 726,987 - +0.6 727,009 + +1.7 727,009 + +2.6 727,010 - -0.7 727,027 + -0.1 727,260 - LU632_RS03615 0.54 -2.0 727,400 - LU632_RS03615 0.85 +0.5 727,468 + -0.9 727,468 + -1.7 727,469 - -0.2 727,534 + -0.8 727,540 + +0.5 727,541 - -0.4 727,541 - -0.0 727,541 - -2.2 727,541 - -1.0 727,541 - +0.6 727,546 - -0.5 727,660 + LU632_RS03620 0.20 -1.2 727,660 + LU632_RS03620 0.20 +0.5 727,660 + LU632_RS03620 0.20 -0.1 727,660 + LU632_RS03620 0.20 -0.5 727,661 - LU632_RS03620 0.20 +1.8 727,869 - LU632_RS03620 0.53 -3.1 727,893 + LU632_RS03620 0.56 -0.3
Or see this region's nucleotide sequence