Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03540

Experiment: plant=Melon; plant sample=M2; plant location=P2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS03530 and LU632_RS03535 are separated by 118 nucleotidesLU632_RS03535 and LU632_RS03540 are separated by 81 nucleotidesLU632_RS03540 and LU632_RS03545 are separated by 265 nucleotidesLU632_RS03545 and LU632_RS03550 are separated by 20 nucleotides LU632_RS03530: LU632_RS03530 - replication endonuclease, at 713,993 to 716,218 _RS03530 LU632_RS03535: LU632_RS03535 - DinI family protein, at 716,337 to 716,777 _RS03535 LU632_RS03540: LU632_RS03540 - hypothetical protein, at 716,859 to 717,590 _RS03540 LU632_RS03545: LU632_RS03545 - hypothetical protein, at 717,856 to 718,056 _RS03545 LU632_RS03550: LU632_RS03550 - phage portal protein, at 718,077 to 719,099 _RS03550 Position (kb) 716 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 715.884 kb on + strand, within LU632_RS03530at 715.953 kb on + strand, within LU632_RS03530at 715.996 kb on + strandat 715.997 kb on - strandat 715.997 kb on - strandat 715.998 kb on + strandat 715.998 kb on + strandat 716.019 kb on + strandat 716.019 kb on + strandat 716.019 kb on + strandat 716.020 kb on - strandat 716.020 kb on - strandat 716.020 kb on - strandat 716.042 kb on - strandat 716.080 kb on + strandat 716.081 kb on - strandat 716.131 kb on - strandat 716.159 kb on - strandat 716.369 kb on - strandat 716.458 kb on + strand, within LU632_RS03535at 716.459 kb on - strand, within LU632_RS03535at 716.554 kb on + strand, within LU632_RS03535at 716.555 kb on - strand, within LU632_RS03535at 716.566 kb on + strand, within LU632_RS03535at 716.632 kb on + strand, within LU632_RS03535at 716.633 kb on - strand, within LU632_RS03535at 716.633 kb on - strand, within LU632_RS03535at 716.869 kb on + strandat 716.870 kb on - strandat 716.870 kb on - strandat 716.870 kb on - strandat 716.881 kb on + strandat 716.898 kb on - strandat 716.898 kb on - strandat 716.906 kb on + strandat 716.906 kb on + strandat 716.907 kb on - strandat 717.105 kb on - strand, within LU632_RS03540at 717.165 kb on + strand, within LU632_RS03540at 717.166 kb on - strand, within LU632_RS03540at 717.211 kb on - strand, within LU632_RS03540at 717.219 kb on - strand, within LU632_RS03540at 717.219 kb on - strand, within LU632_RS03540at 717.228 kb on + strand, within LU632_RS03540at 717.248 kb on + strand, within LU632_RS03540at 717.318 kb on - strand, within LU632_RS03540at 717.336 kb on - strand, within LU632_RS03540at 717.341 kb on + strand, within LU632_RS03540at 717.342 kb on - strand, within LU632_RS03540at 717.423 kb on + strand, within LU632_RS03540at 717.423 kb on + strand, within LU632_RS03540at 717.425 kb on + strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.452 kb on + strand, within LU632_RS03540at 717.588 kb on + strandat 717.588 kb on + strandat 717.589 kb on - strandat 717.705 kb on - strandat 717.716 kb on + strandat 717.716 kb on + strandat 717.717 kb on - strandat 717.858 kb on - strandat 717.871 kb on - strandat 717.920 kb on + strand, within LU632_RS03545at 717.963 kb on - strand, within LU632_RS03545at 718.079 kb on - strandat 718.099 kb on + strandat 718.227 kb on - strand, within LU632_RS03550at 718.239 kb on - strand, within LU632_RS03550at 718.247 kb on + strand, within LU632_RS03550at 718.302 kb on + strand, within LU632_RS03550at 718.302 kb on + strand, within LU632_RS03550at 718.421 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.514 kb on - strand, within LU632_RS03550at 718.516 kb on + strand, within LU632_RS03550at 718.562 kb on + strand, within LU632_RS03550at 718.577 kb on - strand, within LU632_RS03550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2
remove
715,884 + LU632_RS03530 0.85 -0.8
715,953 + LU632_RS03530 0.88 +0.6
715,996 + -0.0
715,997 - -1.8
715,997 - +0.2
715,998 + -1.9
715,998 + -0.5
716,019 + +2.8
716,019 + +0.5
716,019 + +0.7
716,020 - -1.9
716,020 - -1.0
716,020 - -0.2
716,042 - +1.2
716,080 + -1.5
716,081 - -0.2
716,131 - +1.8
716,159 - -0.4
716,369 - -0.4
716,458 + LU632_RS03535 0.27 -0.0
716,459 - LU632_RS03535 0.28 -1.2
716,554 + LU632_RS03535 0.49 +0.3
716,555 - LU632_RS03535 0.49 +1.1
716,566 + LU632_RS03535 0.52 +2.2
716,632 + LU632_RS03535 0.67 -0.8
716,633 - LU632_RS03535 0.67 +0.9
716,633 - LU632_RS03535 0.67 -0.2
716,869 + -1.6
716,870 - -1.2
716,870 - -0.6
716,870 - +1.7
716,881 + -0.2
716,898 - -0.4
716,898 - -1.9
716,906 + +0.8
716,906 + +1.2
716,907 - +0.8
717,105 - LU632_RS03540 0.34 -1.5
717,165 + LU632_RS03540 0.42 -1.1
717,166 - LU632_RS03540 0.42 -1.1
717,211 - LU632_RS03540 0.48 -1.4
717,219 - LU632_RS03540 0.49 -0.5
717,219 - LU632_RS03540 0.49 +3.5
717,228 + LU632_RS03540 0.50 -1.0
717,248 + LU632_RS03540 0.53 +0.4
717,318 - LU632_RS03540 0.63 +0.2
717,336 - LU632_RS03540 0.65 -1.9
717,341 + LU632_RS03540 0.66 -1.9
717,342 - LU632_RS03540 0.66 -0.0
717,423 + LU632_RS03540 0.77 +0.4
717,423 + LU632_RS03540 0.77 -0.4
717,425 + LU632_RS03540 0.77 -1.0
717,426 - LU632_RS03540 0.77 -1.0
717,426 - LU632_RS03540 0.77 +1.1
717,426 - LU632_RS03540 0.77 -0.4
717,452 + LU632_RS03540 0.81 +0.5
717,588 + -2.3
717,588 + +0.2
717,589 - +0.1
717,705 - -1.9
717,716 + +0.4
717,716 + -3.0
717,717 - -0.9
717,858 - -0.3
717,871 - -1.6
717,920 + LU632_RS03545 0.32 -0.7
717,963 - LU632_RS03545 0.53 -2.4
718,079 - -2.3
718,099 + +2.1
718,227 - LU632_RS03550 0.15 -0.8
718,239 - LU632_RS03550 0.16 +0.3
718,247 + LU632_RS03550 0.17 +0.4
718,302 + LU632_RS03550 0.22 -0.2
718,302 + LU632_RS03550 0.22 +0.1
718,421 + LU632_RS03550 0.34 -0.2
718,480 + LU632_RS03550 0.39 -0.8
718,480 + LU632_RS03550 0.39 +0.1
718,480 + LU632_RS03550 0.39 +0.2
718,480 + LU632_RS03550 0.39 -2.8
718,481 - LU632_RS03550 0.39 +0.7
718,481 - LU632_RS03550 0.39 -0.4
718,481 - LU632_RS03550 0.39 +0.2
718,514 - LU632_RS03550 0.43 +0.9
718,516 + LU632_RS03550 0.43 -0.5
718,562 + LU632_RS03550 0.47 -0.2
718,577 - LU632_RS03550 0.49 +3.3

Or see this region's nucleotide sequence