Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03255 and LU632_RS03260 are separated by 1 nucleotides LU632_RS03260 and LU632_RS03265 overlap by 4 nucleotides LU632_RS03265 and LU632_RS03270 are separated by 156 nucleotides LU632_RS03270 and LU632_RS03275 are separated by 47 nucleotides LU632_RS03275 and LU632_RS03280 are separated by 202 nucleotides
LU632_RS03255: LU632_RS03255 - harpin HrpZ family protein, at 662,910 to 664,127
_RS03255
LU632_RS03260: LU632_RS03260 - type III secretion system chaperone, at 664,129 to 664,704
_RS03260
LU632_RS03265: LU632_RS03265 - avirulence protein, at 664,701 to 665,930
_RS03265
LU632_RS03270: LU632_RS03270 - hypothetical protein, at 666,087 to 666,284
_RS03270
LU632_RS03275: LU632_RS03275 - hypothetical protein, at 666,332 to 666,490
_RS03275
LU632_RS03280: LU632_RS03280 - AvrE-family type 3 secretion system effector, at 666,693 to 672,020
_RS03280
Position (kb) 664
665
666 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 663.859 kb on - strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.955 kb on + strand, within LU632_RS03255 at 663.956 kb on - strand, within LU632_RS03255 at 663.956 kb on - strand, within LU632_RS03255 at 663.956 kb on - strand, within LU632_RS03255 at 663.956 kb on - strand, within LU632_RS03255 at 664.095 kb on - strand at 664.210 kb on + strand, within LU632_RS03260 at 664.234 kb on - strand, within LU632_RS03260 at 664.354 kb on + strand, within LU632_RS03260 at 664.514 kb on + strand, within LU632_RS03260 at 664.515 kb on - strand, within LU632_RS03260 at 664.515 kb on - strand, within LU632_RS03260 at 664.616 kb on + strand, within LU632_RS03260 at 664.617 kb on - strand, within LU632_RS03260 at 664.637 kb on + strand, within LU632_RS03260 at 664.638 kb on - strand, within LU632_RS03260 at 664.708 kb on + strand at 664.730 kb on + strand at 664.730 kb on + strand at 664.731 kb on - strand at 664.731 kb on - strand at 664.851 kb on - strand, within LU632_RS03265 at 664.851 kb on - strand, within LU632_RS03265 at 664.853 kb on + strand, within LU632_RS03265 at 664.854 kb on - strand, within LU632_RS03265 at 664.981 kb on + strand, within LU632_RS03265 at 664.984 kb on + strand, within LU632_RS03265 at 664.985 kb on - strand, within LU632_RS03265 at 665.067 kb on - strand, within LU632_RS03265 at 665.067 kb on - strand, within LU632_RS03265 at 665.169 kb on + strand, within LU632_RS03265 at 665.373 kb on - strand, within LU632_RS03265 at 665.387 kb on + strand, within LU632_RS03265 at 665.387 kb on + strand, within LU632_RS03265 at 665.446 kb on + strand, within LU632_RS03265 at 665.446 kb on - strand, within LU632_RS03265 at 665.447 kb on - strand, within LU632_RS03265 at 665.504 kb on + strand, within LU632_RS03265 at 665.544 kb on - strand, within LU632_RS03265 at 665.603 kb on + strand, within LU632_RS03265 at 665.603 kb on + strand, within LU632_RS03265 at 665.618 kb on + strand, within LU632_RS03265 at 665.618 kb on + strand, within LU632_RS03265 at 665.635 kb on - strand, within LU632_RS03265 at 665.636 kb on + strand, within LU632_RS03265 at 665.636 kb on + strand, within LU632_RS03265 at 665.636 kb on + strand, within LU632_RS03265 at 665.636 kb on + strand, within LU632_RS03265 at 665.637 kb on - strand, within LU632_RS03265 at 665.637 kb on - strand, within LU632_RS03265 at 665.653 kb on - strand, within LU632_RS03265 at 665.653 kb on - strand, within LU632_RS03265 at 665.653 kb on - strand, within LU632_RS03265 at 665.706 kb on - strand, within LU632_RS03265 at 665.848 kb on - strand at 665.935 kb on - strand at 665.946 kb on - strand at 666.114 kb on - strand, within LU632_RS03270 at 666.322 kb on + strand at 666.327 kb on + strand at 666.542 kb on - strand at 666.620 kb on + strand at 666.657 kb on + strand at 666.658 kb on - strand at 666.671 kb on + strand at 666.730 kb on + strand at 666.731 kb on - strand at 666.797 kb on + strand at 666.798 kb on - strand at 666.798 kb on - strand at 666.857 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 663,859 - LU632_RS03255 0.78 +1.5 663,955 + LU632_RS03255 0.86 +0.0 663,955 + LU632_RS03255 0.86 +0.6 663,955 + LU632_RS03255 0.86 +0.3 663,955 + LU632_RS03255 0.86 +3.4 663,955 + LU632_RS03255 0.86 +1.4 663,955 + LU632_RS03255 0.86 -0.3 663,955 + LU632_RS03255 0.86 -0.2 663,955 + LU632_RS03255 0.86 -0.1 663,955 + LU632_RS03255 0.86 +2.8 663,956 - LU632_RS03255 0.86 +0.4 663,956 - LU632_RS03255 0.86 +1.4 663,956 - LU632_RS03255 0.86 +0.4 663,956 - LU632_RS03255 0.86 -1.2 664,095 - +0.6 664,210 + LU632_RS03260 0.14 +0.8 664,234 - LU632_RS03260 0.18 -0.4 664,354 + LU632_RS03260 0.39 +0.9 664,514 + LU632_RS03260 0.67 -0.5 664,515 - LU632_RS03260 0.67 -0.5 664,515 - LU632_RS03260 0.67 -0.4 664,616 + LU632_RS03260 0.85 -0.3 664,617 - LU632_RS03260 0.85 +1.8 664,637 + LU632_RS03260 0.88 -0.1 664,638 - LU632_RS03260 0.88 -1.1 664,708 + +2.5 664,730 + -0.2 664,730 + +0.4 664,731 - -0.2 664,731 - +1.9 664,851 - LU632_RS03265 0.12 -0.2 664,851 - LU632_RS03265 0.12 +0.9 664,853 + LU632_RS03265 0.12 -0.0 664,854 - LU632_RS03265 0.12 +0.2 664,981 + LU632_RS03265 0.23 +0.2 664,984 + LU632_RS03265 0.23 -0.2 664,985 - LU632_RS03265 0.23 -0.3 665,067 - LU632_RS03265 0.30 -0.8 665,067 - LU632_RS03265 0.30 +1.2 665,169 + LU632_RS03265 0.38 +0.3 665,373 - LU632_RS03265 0.55 -0.6 665,387 + LU632_RS03265 0.56 -0.5 665,387 + LU632_RS03265 0.56 -1.4 665,446 + LU632_RS03265 0.61 -1.7 665,446 - LU632_RS03265 0.61 +0.1 665,447 - LU632_RS03265 0.61 +0.4 665,504 + LU632_RS03265 0.65 +0.9 665,544 - LU632_RS03265 0.69 -2.3 665,603 + LU632_RS03265 0.73 +1.4 665,603 + LU632_RS03265 0.73 -1.2 665,618 + LU632_RS03265 0.75 -1.0 665,618 + LU632_RS03265 0.75 +4.3 665,635 - LU632_RS03265 0.76 +0.6 665,636 + LU632_RS03265 0.76 +1.1 665,636 + LU632_RS03265 0.76 -1.7 665,636 + LU632_RS03265 0.76 +0.4 665,636 + LU632_RS03265 0.76 +0.3 665,637 - LU632_RS03265 0.76 +1.2 665,637 - LU632_RS03265 0.76 +0.6 665,653 - LU632_RS03265 0.77 -0.8 665,653 - LU632_RS03265 0.77 +0.2 665,653 - LU632_RS03265 0.77 +0.2 665,706 - LU632_RS03265 0.82 -1.4 665,848 - -2.0 665,935 - -0.7 665,946 - -0.2 666,114 - LU632_RS03270 0.14 -0.9 666,322 + +1.0 666,327 + -0.2 666,542 - -0.2 666,620 + -1.0 666,657 + -1.0 666,658 - -0.3 666,671 + +0.2 666,730 + -2.4 666,731 - -0.5 666,797 + -0.8 666,798 - -0.0 666,798 - -1.0 666,857 + +3.2
Or see this region's nucleotide sequence