Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02340

Experiment: plant=Melon; plant sample=M2; plant location=P2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrlmG and LU632_RS02340 are separated by 29 nucleotidesLU632_RS02340 and LU632_RS02345 are separated by 242 nucleotides LU632_RS02335: rlmG - 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG, at 458,198 to 459,325 rlmG LU632_RS02340: LU632_RS02340 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 459,355 to 460,446 _RS02340 LU632_RS02345: LU632_RS02345 - TIM barrel protein, at 460,689 to 461,486 _RS02345 Position (kb) 459 460 461Strain fitness (log2 ratio) -2 -1 0 1 2 3at 458.400 kb on - strand, within rlmGat 458.400 kb on - strand, within rlmGat 458.635 kb on + strand, within rlmGat 458.641 kb on + strand, within rlmGat 458.641 kb on + strand, within rlmGat 458.642 kb on - strand, within rlmGat 458.642 kb on - strand, within rlmGat 458.642 kb on - strand, within rlmGat 458.652 kb on + strand, within rlmGat 458.652 kb on + strand, within rlmGat 458.673 kb on + strand, within rlmGat 458.674 kb on - strand, within rlmGat 458.723 kb on - strand, within rlmGat 458.881 kb on - strand, within rlmGat 459.236 kb on + strandat 459.300 kb on + strandat 459.301 kb on - strandat 459.332 kb on - strandat 459.439 kb on - strandat 459.505 kb on + strand, within LU632_RS02340at 459.505 kb on + strand, within LU632_RS02340at 459.515 kb on - strand, within LU632_RS02340at 459.602 kb on - strand, within LU632_RS02340at 459.623 kb on + strand, within LU632_RS02340at 459.623 kb on + strand, within LU632_RS02340at 459.623 kb on + strand, within LU632_RS02340at 459.624 kb on - strand, within LU632_RS02340at 459.624 kb on - strand, within LU632_RS02340at 459.649 kb on + strand, within LU632_RS02340at 459.794 kb on - strand, within LU632_RS02340at 459.794 kb on - strand, within LU632_RS02340at 459.810 kb on + strand, within LU632_RS02340at 459.811 kb on - strand, within LU632_RS02340at 459.811 kb on - strand, within LU632_RS02340at 459.859 kb on - strand, within LU632_RS02340at 459.969 kb on + strand, within LU632_RS02340at 459.971 kb on - strand, within LU632_RS02340at 459.971 kb on - strand, within LU632_RS02340at 459.974 kb on + strand, within LU632_RS02340at 460.153 kb on + strand, within LU632_RS02340at 460.249 kb on - strand, within LU632_RS02340at 460.273 kb on + strand, within LU632_RS02340at 460.398 kb on + strandat 460.398 kb on + strandat 460.399 kb on - strandat 460.399 kb on - strandat 460.399 kb on - strandat 460.399 kb on - strandat 460.399 kb on - strandat 460.399 kb on - strandat 460.399 kb on - strandat 460.471 kb on - strandat 460.543 kb on + strandat 460.543 kb on + strandat 460.544 kb on - strandat 460.544 kb on - strandat 460.556 kb on - strandat 460.646 kb on + strandat 460.646 kb on + strandat 460.646 kb on + strandat 460.647 kb on - strandat 460.684 kb on - strandat 460.707 kb on + strandat 460.713 kb on + strandat 460.713 kb on + strandat 460.714 kb on - strandat 460.789 kb on + strand, within LU632_RS02345at 460.789 kb on + strand, within LU632_RS02345at 460.790 kb on - strand, within LU632_RS02345at 460.790 kb on - strand, within LU632_RS02345at 460.791 kb on + strand, within LU632_RS02345at 460.792 kb on - strand, within LU632_RS02345at 460.865 kb on + strand, within LU632_RS02345at 460.866 kb on - strand, within LU632_RS02345at 460.866 kb on - strand, within LU632_RS02345at 460.866 kb on - strand, within LU632_RS02345at 460.947 kb on - strand, within LU632_RS02345at 460.950 kb on + strand, within LU632_RS02345at 460.950 kb on + strand, within LU632_RS02345at 460.951 kb on - strand, within LU632_RS02345at 460.982 kb on - strand, within LU632_RS02345at 461.016 kb on - strand, within LU632_RS02345at 461.041 kb on - strand, within LU632_RS02345at 461.041 kb on - strand, within LU632_RS02345at 461.041 kb on - strand, within LU632_RS02345at 461.041 kb on - strand, within LU632_RS02345at 461.041 kb on - strand, within LU632_RS02345at 461.109 kb on + strand, within LU632_RS02345at 461.288 kb on + strand, within LU632_RS02345at 461.289 kb on - strand, within LU632_RS02345at 461.364 kb on - strand, within LU632_RS02345at 461.384 kb on + strand, within LU632_RS02345at 461.397 kb on + strand, within LU632_RS02345at 461.397 kb on + strand, within LU632_RS02345at 461.398 kb on - strand, within LU632_RS02345at 461.415 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2
remove
458,400 - rlmG LU632_RS02335 0.18 -1.6
458,400 - rlmG LU632_RS02335 0.18 -0.0
458,635 + rlmG LU632_RS02335 0.39 +0.1
458,641 + rlmG LU632_RS02335 0.39 +0.7
458,641 + rlmG LU632_RS02335 0.39 +0.3
458,642 - rlmG LU632_RS02335 0.39 +0.3
458,642 - rlmG LU632_RS02335 0.39 +0.9
458,642 - rlmG LU632_RS02335 0.39 +0.9
458,652 + rlmG LU632_RS02335 0.40 +0.6
458,652 + rlmG LU632_RS02335 0.40 -0.8
458,673 + rlmG LU632_RS02335 0.42 -1.8
458,674 - rlmG LU632_RS02335 0.42 +0.3
458,723 - rlmG LU632_RS02335 0.47 +0.9
458,881 - rlmG LU632_RS02335 0.61 -0.5
459,236 + -0.0
459,300 + -0.7
459,301 - +0.8
459,332 - -0.1
459,439 - +1.9
459,505 + LU632_RS02340 0.14 -0.3
459,505 + LU632_RS02340 0.14 -1.6
459,515 - LU632_RS02340 0.15 -0.8
459,602 - LU632_RS02340 0.23 -0.0
459,623 + LU632_RS02340 0.25 +0.8
459,623 + LU632_RS02340 0.25 -0.2
459,623 + LU632_RS02340 0.25 +0.5
459,624 - LU632_RS02340 0.25 -0.8
459,624 - LU632_RS02340 0.25 +0.6
459,649 + LU632_RS02340 0.27 -0.1
459,794 - LU632_RS02340 0.40 +2.2
459,794 - LU632_RS02340 0.40 +1.1
459,810 + LU632_RS02340 0.42 +1.3
459,811 - LU632_RS02340 0.42 +1.5
459,811 - LU632_RS02340 0.42 -0.1
459,859 - LU632_RS02340 0.46 -2.1
459,969 + LU632_RS02340 0.56 +1.3
459,971 - LU632_RS02340 0.56 +0.2
459,971 - LU632_RS02340 0.56 -0.4
459,974 + LU632_RS02340 0.57 +1.0
460,153 + LU632_RS02340 0.73 -1.3
460,249 - LU632_RS02340 0.82 +1.8
460,273 + LU632_RS02340 0.84 -1.1
460,398 + +0.1
460,398 + -0.2
460,399 - +0.7
460,399 - +0.9
460,399 - +1.2
460,399 - -1.7
460,399 - +1.2
460,399 - +1.4
460,399 - -0.5
460,471 - +0.1
460,543 + -0.4
460,543 + +0.5
460,544 - +0.5
460,544 - -2.5
460,556 - -0.3
460,646 + +2.1
460,646 + +3.7
460,646 + -0.6
460,647 - -0.3
460,684 - -0.3
460,707 + +0.3
460,713 + +2.1
460,713 + +2.1
460,714 - +3.5
460,789 + LU632_RS02345 0.13 -2.4
460,789 + LU632_RS02345 0.13 +1.4
460,790 - LU632_RS02345 0.13 -1.0
460,790 - LU632_RS02345 0.13 -0.1
460,791 + LU632_RS02345 0.13 +0.6
460,792 - LU632_RS02345 0.13 +0.3
460,865 + LU632_RS02345 0.22 -1.1
460,866 - LU632_RS02345 0.22 -2.4
460,866 - LU632_RS02345 0.22 +1.9
460,866 - LU632_RS02345 0.22 +1.3
460,947 - LU632_RS02345 0.32 +0.9
460,950 + LU632_RS02345 0.33 +0.6
460,950 + LU632_RS02345 0.33 +0.2
460,951 - LU632_RS02345 0.33 +1.6
460,982 - LU632_RS02345 0.37 -0.3
461,016 - LU632_RS02345 0.41 +1.0
461,041 - LU632_RS02345 0.44 +2.9
461,041 - LU632_RS02345 0.44 -0.1
461,041 - LU632_RS02345 0.44 -1.0
461,041 - LU632_RS02345 0.44 +1.9
461,041 - LU632_RS02345 0.44 +0.3
461,109 + LU632_RS02345 0.53 +0.8
461,288 + LU632_RS02345 0.75 -0.9
461,289 - LU632_RS02345 0.75 -0.7
461,364 - LU632_RS02345 0.85 -0.2
461,384 + LU632_RS02345 0.87 -0.4
461,397 + LU632_RS02345 0.89 +0.3
461,397 + LU632_RS02345 0.89 +0.9
461,398 - LU632_RS02345 0.89 -0.4
461,415 - +1.3

Or see this region's nucleotide sequence