Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt proA and LU632_RS01195 are separated by 83 nucleotides LU632_RS01195 and LU632_RS01200 are separated by 42 nucleotides LU632_RS01200 and LU632_RS01205 are separated by 528 nucleotides
LU632_RS01190: proA - glutamate-5-semialdehyde dehydrogenase, at 251,311 to 252,564
proA
LU632_RS01195: LU632_RS01195 - LysE family translocator, at 252,648 to 252,767
_RS01195
LU632_RS01200: LU632_RS01200 - HNH endonuclease, at 252,810 to 253,175
_RS01200
LU632_RS01205: LU632_RS01205 - class I fumarate hydratase FumA, at 253,704 to 255,350
_RS01205
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 251.870 kb on + strand, within proA at 251.870 kb on + strand, within proA at 251.870 kb on + strand, within proA at 251.870 kb on + strand, within proA at 251.871 kb on - strand, within proA at 251.871 kb on - strand, within proA at 251.874 kb on + strand, within proA at 251.874 kb on + strand, within proA at 251.874 kb on + strand, within proA at 251.875 kb on - strand, within proA at 251.875 kb on - strand, within proA at 252.039 kb on + strand, within proA at 252.040 kb on - strand, within proA at 252.040 kb on - strand, within proA at 252.154 kb on - strand, within proA at 252.346 kb on - strand, within proA at 252.523 kb on + strand at 252.523 kb on + strand at 252.523 kb on + strand at 252.559 kb on - strand at 252.572 kb on - strand at 252.576 kb on + strand at 252.577 kb on - strand at 252.577 kb on - strand at 252.591 kb on + strand at 252.591 kb on + strand at 252.592 kb on - strand at 252.592 kb on - strand at 252.701 kb on - strand, within LU632_RS01195 at 252.719 kb on + strand, within LU632_RS01195 at 252.719 kb on + strand, within LU632_RS01195 at 252.720 kb on - strand, within LU632_RS01195 at 252.726 kb on + strand, within LU632_RS01195 at 252.759 kb on - strand at 252.768 kb on + strand at 252.769 kb on - strand at 252.808 kb on - strand at 252.810 kb on - strand at 252.986 kb on - strand, within LU632_RS01200 at 253.018 kb on - strand, within LU632_RS01200 at 253.018 kb on - strand, within LU632_RS01200 at 253.040 kb on + strand, within LU632_RS01200 at 253.077 kb on - strand, within LU632_RS01200 at 253.077 kb on - strand, within LU632_RS01200 at 253.077 kb on - strand, within LU632_RS01200 at 253.085 kb on + strand, within LU632_RS01200 at 253.086 kb on - strand, within LU632_RS01200 at 253.090 kb on - strand, within LU632_RS01200 at 253.248 kb on + strand at 253.248 kb on + strand at 253.249 kb on - strand at 253.252 kb on + strand at 253.263 kb on + strand at 253.267 kb on + strand at 253.267 kb on + strand at 253.267 kb on + strand at 253.268 kb on - strand at 253.268 kb on - strand at 253.268 kb on - strand at 253.268 kb on - strand at 253.268 kb on - strand at 253.345 kb on + strand at 253.360 kb on + strand at 253.517 kb on + strand at 253.518 kb on - strand at 253.518 kb on - strand at 253.520 kb on - strand at 253.607 kb on + strand at 253.705 kb on + strand at 253.736 kb on + strand at 253.862 kb on + strand at 253.901 kb on + strand, within LU632_RS01205 at 253.901 kb on + strand, within LU632_RS01205 at 253.902 kb on - strand, within LU632_RS01205 at 253.964 kb on + strand, within LU632_RS01205 at 253.974 kb on - strand, within LU632_RS01205 at 253.974 kb on - strand, within LU632_RS01205 at 253.979 kb on + strand, within LU632_RS01205 at 253.979 kb on + strand, within LU632_RS01205 at 253.980 kb on - strand, within LU632_RS01205 at 254.012 kb on - strand, within LU632_RS01205 at 254.089 kb on + strand, within LU632_RS01205 at 254.089 kb on + strand, within LU632_RS01205 at 254.093 kb on - strand, within LU632_RS01205 at 254.113 kb on + strand, within LU632_RS01205 at 254.113 kb on + strand, within LU632_RS01205 at 254.114 kb on - strand, within LU632_RS01205 at 254.114 kb on - strand, within LU632_RS01205
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 251,870 + proA LU632_RS01190 0.45 -0.2 251,870 + proA LU632_RS01190 0.45 +0.4 251,870 + proA LU632_RS01190 0.45 -1.2 251,870 + proA LU632_RS01190 0.45 -0.8 251,871 - proA LU632_RS01190 0.45 -2.1 251,871 - proA LU632_RS01190 0.45 -1.0 251,874 + proA LU632_RS01190 0.45 -1.0 251,874 + proA LU632_RS01190 0.45 -1.4 251,874 + proA LU632_RS01190 0.45 -0.7 251,875 - proA LU632_RS01190 0.45 -1.7 251,875 - proA LU632_RS01190 0.45 -0.4 252,039 + proA LU632_RS01190 0.58 -1.4 252,040 - proA LU632_RS01190 0.58 -0.2 252,040 - proA LU632_RS01190 0.58 -2.1 252,154 - proA LU632_RS01190 0.67 +0.8 252,346 - proA LU632_RS01190 0.83 +1.2 252,523 + +0.1 252,523 + -0.2 252,523 + -1.4 252,559 - -1.4 252,572 - -0.8 252,576 + -1.4 252,577 - -1.3 252,577 - -0.3 252,591 + -1.5 252,591 + +2.3 252,592 - -2.4 252,592 - +1.8 252,701 - LU632_RS01195 0.44 +2.6 252,719 + LU632_RS01195 0.59 +0.1 252,719 + LU632_RS01195 0.59 +2.1 252,720 - LU632_RS01195 0.60 +0.2 252,726 + LU632_RS01195 0.65 -1.8 252,759 - -0.1 252,768 + +0.2 252,769 - +1.8 252,808 - -0.1 252,810 - +0.2 252,986 - LU632_RS01200 0.48 -1.1 253,018 - LU632_RS01200 0.57 -1.7 253,018 - LU632_RS01200 0.57 +0.5 253,040 + LU632_RS01200 0.63 +0.4 253,077 - LU632_RS01200 0.73 -1.6 253,077 - LU632_RS01200 0.73 +1.1 253,077 - LU632_RS01200 0.73 -0.9 253,085 + LU632_RS01200 0.75 -0.0 253,086 - LU632_RS01200 0.75 +0.3 253,090 - LU632_RS01200 0.77 -0.7 253,248 + +0.3 253,248 + -0.8 253,249 - +1.7 253,252 + -0.4 253,263 + +0.5 253,267 + -0.9 253,267 + +0.8 253,267 + -2.8 253,268 - -1.5 253,268 - -0.2 253,268 - -0.2 253,268 - -0.4 253,268 - -1.4 253,345 + +0.7 253,360 + -0.9 253,517 + +0.1 253,518 - -1.7 253,518 - +0.3 253,520 - +0.2 253,607 + +0.3 253,705 + +0.8 253,736 + -1.4 253,862 + -0.5 253,901 + LU632_RS01205 0.12 -1.1 253,901 + LU632_RS01205 0.12 -3.7 253,902 - LU632_RS01205 0.12 +1.8 253,964 + LU632_RS01205 0.16 -2.7 253,974 - LU632_RS01205 0.16 -0.8 253,974 - LU632_RS01205 0.16 +1.0 253,979 + LU632_RS01205 0.17 -1.2 253,979 + LU632_RS01205 0.17 +2.8 253,980 - LU632_RS01205 0.17 -0.1 254,012 - LU632_RS01205 0.19 -2.5 254,089 + LU632_RS01205 0.23 +1.3 254,089 + LU632_RS01205 0.23 +3.2 254,093 - LU632_RS01205 0.24 -2.3 254,113 + LU632_RS01205 0.25 -2.6 254,113 + LU632_RS01205 0.25 -1.1 254,114 - LU632_RS01205 0.25 -0.6 254,114 - LU632_RS01205 0.25 +1.5
Or see this region's nucleotide sequence