Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00780

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
167,152	+				+0.3
167,153	-				+0.6
167,236	-				-2.3
167,360	-				-1.6
167,370	-				+0.5
167,370	-				+0.2
167,370	-				-0.1
167,370	-				-0.4
167,447	+				-1.4
167,447	+				-0.8
167,447	+				+0.6
167,447	+				-0.5
167,447	+				+0.9
167,447	+				+0.5
167,447	+				+0.8
167,493	+	kdpF	LU632_RS00780	0.14	+1.8
167,493	+	kdpF	LU632_RS00780	0.14	-2.8
167,538	+	kdpF	LU632_RS00780	0.64	-0.6
167,538	+	kdpF	LU632_RS00780	0.64	+0.6
167,538	+	kdpF	LU632_RS00780	0.64	+0.6
167,539	-	kdpF	LU632_RS00780	0.66	+0.6
167,539	-	kdpF	LU632_RS00780	0.66	-0.8
167,539	-	kdpF	LU632_RS00780	0.66	+1.1
167,540	+	kdpF	LU632_RS00780	0.67	-1.2
167,602	+				-0.6
167,602	+				+0.2
167,605	-				+2.2
167,684	+				-0.5
167,685	-				+0.8
167,799	+	kdpA	LU632_RS00785	0.14	-0.8
168,276	+	kdpA	LU632_RS00785	0.42	+3.8
168,484	-	kdpA	LU632_RS00785	0.54	-2.3
168,484	-	kdpA	LU632_RS00785	0.54	-0.1