Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00695 and LU632_RS00700 are separated by 106 nucleotides LU632_RS00700 and LU632_RS00705 overlap by 13 nucleotides LU632_RS00705 and tssB are separated by 124 nucleotides
LU632_RS00695: LU632_RS00695 - fimbria/pilus periplasmic chaperone, at 146,052 to 146,798
_RS00695
LU632_RS00700: LU632_RS00700 - fimbrial biogenesis outer membrane usher protein, at 146,905 to 149,541
_RS00700
LU632_RS00705: LU632_RS00705 - type 1 fimbrial protein, at 149,529 to 150,110
_RS00705
LU632_RS00710: tssB - type VI secretion system contractile sheath small subunit, at 150,235 to 150,768
tssB
Position (kb) 146
147
148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 145.913 kb on + strand at 145.963 kb on + strand at 145.964 kb on - strand at 145.967 kb on + strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 146.052 kb on - strand at 146.089 kb on + strand at 146.089 kb on + strand at 146.253 kb on - strand, within LU632_RS00695 at 146.833 kb on - strand at 146.909 kb on - strand at 146.941 kb on - strand at 147.008 kb on + strand at 147.008 kb on + strand at 147.041 kb on + strand at 147.183 kb on + strand, within LU632_RS00700 at 147.263 kb on - strand, within LU632_RS00700 at 147.289 kb on - strand, within LU632_RS00700 at 147.293 kb on + strand, within LU632_RS00700 at 147.298 kb on - strand, within LU632_RS00700 at 147.368 kb on + strand, within LU632_RS00700 at 147.375 kb on + strand, within LU632_RS00700 at 147.376 kb on - strand, within LU632_RS00700 at 147.430 kb on - strand, within LU632_RS00700 at 147.470 kb on - strand, within LU632_RS00700 at 147.520 kb on + strand, within LU632_RS00700 at 147.520 kb on + strand, within LU632_RS00700 at 147.521 kb on - strand, within LU632_RS00700 at 147.521 kb on - strand, within LU632_RS00700 at 147.522 kb on + strand, within LU632_RS00700 at 147.523 kb on - strand, within LU632_RS00700 at 147.523 kb on - strand, within LU632_RS00700 at 147.525 kb on + strand, within LU632_RS00700 at 147.526 kb on - strand, within LU632_RS00700 at 147.535 kb on + strand, within LU632_RS00700 at 147.536 kb on - strand, within LU632_RS00700 at 147.682 kb on - strand, within LU632_RS00700 at 147.682 kb on - strand, within LU632_RS00700 at 147.717 kb on + strand, within LU632_RS00700 at 147.718 kb on - strand, within LU632_RS00700 at 147.754 kb on - strand, within LU632_RS00700 at 147.782 kb on - strand, within LU632_RS00700 at 147.788 kb on + strand, within LU632_RS00700 at 147.789 kb on - strand, within LU632_RS00700 at 147.844 kb on + strand, within LU632_RS00700 at 147.845 kb on - strand, within LU632_RS00700 at 147.845 kb on - strand, within LU632_RS00700 at 147.845 kb on - strand, within LU632_RS00700 at 148.023 kb on + strand, within LU632_RS00700 at 148.032 kb on + strand, within LU632_RS00700 at 148.074 kb on - strand, within LU632_RS00700 at 148.104 kb on - strand, within LU632_RS00700 at 148.111 kb on - strand, within LU632_RS00700 at 148.171 kb on - strand, within LU632_RS00700 at 148.171 kb on - strand, within LU632_RS00700 at 148.174 kb on + strand, within LU632_RS00700 at 148.174 kb on + strand, within LU632_RS00700 at 148.174 kb on + strand, within LU632_RS00700 at 148.175 kb on - strand, within LU632_RS00700 at 148.175 kb on - strand, within LU632_RS00700 at 148.175 kb on - strand, within LU632_RS00700 at 148.175 kb on - strand, within LU632_RS00700 at 148.177 kb on - strand, within LU632_RS00700 at 148.183 kb on - strand, within LU632_RS00700 at 148.191 kb on + strand, within LU632_RS00700 at 148.200 kb on - strand, within LU632_RS00700 at 148.243 kb on - strand, within LU632_RS00700 at 148.258 kb on - strand, within LU632_RS00700 at 148.259 kb on + strand, within LU632_RS00700 at 148.259 kb on + strand, within LU632_RS00700 at 148.259 kb on + strand, within LU632_RS00700 at 148.259 kb on + strand, within LU632_RS00700 at 148.259 kb on + strand, within LU632_RS00700 at 148.261 kb on + strand, within LU632_RS00700 at 148.262 kb on - strand, within LU632_RS00700 at 148.262 kb on - strand, within LU632_RS00700 at 148.272 kb on + strand, within LU632_RS00700 at 148.277 kb on - strand, within LU632_RS00700 at 148.277 kb on - strand, within LU632_RS00700 at 148.277 kb on - strand, within LU632_RS00700 at 148.285 kb on - strand, within LU632_RS00700 at 148.338 kb on + strand, within LU632_RS00700 at 148.525 kb on + strand, within LU632_RS00700 at 148.527 kb on + strand, within LU632_RS00700 at 148.527 kb on + strand, within LU632_RS00700 at 148.550 kb on - strand, within LU632_RS00700 at 148.550 kb on - strand, within LU632_RS00700 at 148.648 kb on + strand, within LU632_RS00700 at 148.679 kb on - strand, within LU632_RS00700 at 148.680 kb on + strand, within LU632_RS00700 at 148.683 kb on + strand, within LU632_RS00700 at 148.684 kb on - strand, within LU632_RS00700 at 148.757 kb on - strand, within LU632_RS00700 at 148.759 kb on - strand, within LU632_RS00700 at 148.834 kb on + strand, within LU632_RS00700 at 148.889 kb on + strand, within LU632_RS00700 at 148.890 kb on - strand, within LU632_RS00700 at 148.928 kb on + strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.929 kb on - strand, within LU632_RS00700 at 148.932 kb on + strand, within LU632_RS00700 at 149.088 kb on - strand, within LU632_RS00700 at 149.166 kb on + strand, within LU632_RS00700 at 149.174 kb on + strand, within LU632_RS00700 at 149.174 kb on + strand, within LU632_RS00700 at 149.319 kb on - strand at 149.322 kb on + strand at 149.323 kb on - strand at 149.349 kb on + strand at 149.350 kb on - strand at 149.429 kb on + strand at 149.432 kb on - strand at 149.432 kb on - strand at 149.432 kb on - strand at 149.435 kb on + strand at 149.435 kb on + strand at 149.639 kb on - strand, within LU632_RS00705 at 149.664 kb on + strand, within LU632_RS00705 at 149.694 kb on - strand, within LU632_RS00705 at 149.787 kb on - strand, within LU632_RS00705 at 150.021 kb on + strand, within LU632_RS00705 at 150.033 kb on + strand, within LU632_RS00705 at 150.299 kb on + strand, within tssB at 150.374 kb on + strand, within tssB
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 145,913 + +0.3 145,963 + -1.1 145,964 - +0.2 145,967 + -0.9 145,968 - -0.6 145,968 - -0.8 145,968 - +1.9 145,968 - +1.0 145,968 - +2.6 146,052 - -0.8 146,089 + +0.6 146,089 + +2.1 146,253 - LU632_RS00695 0.27 +0.5 146,833 - -0.8 146,909 - -0.1 146,941 - +0.2 147,008 + +0.7 147,008 + +0.2 147,041 + +0.5 147,183 + LU632_RS00700 0.11 -0.3 147,263 - LU632_RS00700 0.14 -0.1 147,289 - LU632_RS00700 0.15 -0.5 147,293 + LU632_RS00700 0.15 -0.8 147,298 - LU632_RS00700 0.15 +2.0 147,368 + LU632_RS00700 0.18 -2.6 147,375 + LU632_RS00700 0.18 +0.3 147,376 - LU632_RS00700 0.18 +0.7 147,430 - LU632_RS00700 0.20 +1.0 147,470 - LU632_RS00700 0.21 +0.6 147,520 + LU632_RS00700 0.23 -2.5 147,520 + LU632_RS00700 0.23 -3.3 147,521 - LU632_RS00700 0.23 -0.8 147,521 - LU632_RS00700 0.23 +0.1 147,522 + LU632_RS00700 0.23 +1.4 147,523 - LU632_RS00700 0.23 -0.4 147,523 - LU632_RS00700 0.23 +1.8 147,525 + LU632_RS00700 0.24 -0.2 147,526 - LU632_RS00700 0.24 +0.8 147,535 + LU632_RS00700 0.24 -1.8 147,536 - LU632_RS00700 0.24 +0.7 147,682 - LU632_RS00700 0.29 +1.8 147,682 - LU632_RS00700 0.29 +0.1 147,717 + LU632_RS00700 0.31 +0.8 147,718 - LU632_RS00700 0.31 +0.6 147,754 - LU632_RS00700 0.32 -0.0 147,782 - LU632_RS00700 0.33 +1.0 147,788 + LU632_RS00700 0.33 -1.2 147,789 - LU632_RS00700 0.34 -1.3 147,844 + LU632_RS00700 0.36 +0.8 147,845 - LU632_RS00700 0.36 -3.0 147,845 - LU632_RS00700 0.36 +0.3 147,845 - LU632_RS00700 0.36 -1.3 148,023 + LU632_RS00700 0.42 +0.3 148,032 + LU632_RS00700 0.43 +2.4 148,074 - LU632_RS00700 0.44 -0.6 148,104 - LU632_RS00700 0.45 +0.1 148,111 - LU632_RS00700 0.46 -1.2 148,171 - LU632_RS00700 0.48 +1.6 148,171 - LU632_RS00700 0.48 -1.0 148,174 + LU632_RS00700 0.48 -1.6 148,174 + LU632_RS00700 0.48 -0.8 148,174 + LU632_RS00700 0.48 +0.6 148,175 - LU632_RS00700 0.48 +2.8 148,175 - LU632_RS00700 0.48 +0.3 148,175 - LU632_RS00700 0.48 +0.8 148,175 - LU632_RS00700 0.48 +0.2 148,177 - LU632_RS00700 0.48 -0.2 148,183 - LU632_RS00700 0.48 +0.2 148,191 + LU632_RS00700 0.49 +0.7 148,200 - LU632_RS00700 0.49 +1.7 148,243 - LU632_RS00700 0.51 -0.8 148,258 - LU632_RS00700 0.51 -0.2 148,259 + LU632_RS00700 0.51 +0.4 148,259 + LU632_RS00700 0.51 +0.2 148,259 + LU632_RS00700 0.51 +0.8 148,259 + LU632_RS00700 0.51 +0.1 148,259 + LU632_RS00700 0.51 +1.8 148,261 + LU632_RS00700 0.51 +0.5 148,262 - LU632_RS00700 0.51 +0.6 148,262 - LU632_RS00700 0.51 -0.5 148,272 + LU632_RS00700 0.52 -1.2 148,277 - LU632_RS00700 0.52 -0.7 148,277 - LU632_RS00700 0.52 +2.0 148,277 - LU632_RS00700 0.52 -0.5 148,285 - LU632_RS00700 0.52 -1.3 148,338 + LU632_RS00700 0.54 -0.4 148,525 + LU632_RS00700 0.61 -0.1 148,527 + LU632_RS00700 0.62 +1.6 148,527 + LU632_RS00700 0.62 -1.6 148,550 - LU632_RS00700 0.62 -0.8 148,550 - LU632_RS00700 0.62 -0.4 148,648 + LU632_RS00700 0.66 +2.4 148,679 - LU632_RS00700 0.67 -0.4 148,680 + LU632_RS00700 0.67 +1.2 148,683 + LU632_RS00700 0.67 +1.5 148,684 - LU632_RS00700 0.67 -0.8 148,757 - LU632_RS00700 0.70 +0.0 148,759 - LU632_RS00700 0.70 +0.8 148,834 + LU632_RS00700 0.73 -0.2 148,889 + LU632_RS00700 0.75 -0.6 148,890 - LU632_RS00700 0.75 +0.3 148,928 + LU632_RS00700 0.77 -1.6 148,929 - LU632_RS00700 0.77 -0.1 148,929 - LU632_RS00700 0.77 +3.0 148,929 - LU632_RS00700 0.77 -0.6 148,929 - LU632_RS00700 0.77 +0.7 148,929 - LU632_RS00700 0.77 +0.4 148,932 + LU632_RS00700 0.77 -1.7 149,088 - LU632_RS00700 0.83 -1.8 149,166 + LU632_RS00700 0.86 +0.4 149,174 + LU632_RS00700 0.86 -1.6 149,174 + LU632_RS00700 0.86 +0.8 149,319 - +0.8 149,322 + -0.5 149,323 - +1.0 149,349 + -0.7 149,350 - +0.1 149,429 + +1.4 149,432 - -2.5 149,432 - -0.3 149,432 - +1.2 149,435 + +0.4 149,435 + +1.7 149,639 - LU632_RS00705 0.19 -0.6 149,664 + LU632_RS00705 0.23 -0.4 149,694 - LU632_RS00705 0.28 -0.1 149,787 - LU632_RS00705 0.44 +0.3 150,021 + LU632_RS00705 0.85 -1.2 150,033 + LU632_RS00705 0.87 -0.9 150,299 + tssB LU632_RS00710 0.12 -1.0 150,374 + tssB LU632_RS00710 0.26 -0.2
Or see this region's nucleotide sequence