Experiment: plant=Melon; plant sample=M2; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssH and LU632_RS00690 are separated by 74 nucleotides LU632_RS00690 and LU632_RS00695 are separated by 159 nucleotides LU632_RS00695 and LU632_RS00700 are separated by 106 nucleotides
LU632_RS00685: tssH - type VI secretion system ATPase TssH, at 142,576 to 145,266
tssH
LU632_RS00690: LU632_RS00690 - type 1 fimbrial protein, at 145,341 to 145,892
_RS00690
LU632_RS00695: LU632_RS00695 - fimbria/pilus periplasmic chaperone, at 146,052 to 146,798
_RS00695
LU632_RS00700: LU632_RS00700 - fimbrial biogenesis outer membrane usher protein, at 146,905 to 149,541
_RS00700
Position (kb) 146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 145.060 kb on - strand at 145.149 kb on + strand at 145.149 kb on + strand at 145.222 kb on - strand at 145.233 kb on + strand at 145.314 kb on + strand at 145.357 kb on + strand at 145.363 kb on + strand at 145.363 kb on + strand at 145.478 kb on + strand, within LU632_RS00690 at 145.643 kb on + strand, within LU632_RS00690 at 145.674 kb on + strand, within LU632_RS00690 at 145.674 kb on + strand, within LU632_RS00690 at 145.700 kb on + strand, within LU632_RS00690 at 145.799 kb on + strand, within LU632_RS00690 at 145.799 kb on + strand, within LU632_RS00690 at 145.800 kb on - strand, within LU632_RS00690 at 145.800 kb on - strand, within LU632_RS00690 at 145.822 kb on - strand, within LU632_RS00690 at 145.822 kb on - strand, within LU632_RS00690 at 145.874 kb on + strand at 145.874 kb on + strand at 145.875 kb on - strand at 145.875 kb on - strand at 145.875 kb on - strand at 145.876 kb on - strand at 145.903 kb on - strand at 145.913 kb on + strand at 145.963 kb on + strand at 145.964 kb on - strand at 145.967 kb on + strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 146.052 kb on - strand at 146.089 kb on + strand at 146.089 kb on + strand at 146.253 kb on - strand, within LU632_RS00695 at 146.833 kb on - strand at 146.909 kb on - strand at 146.941 kb on - strand at 147.008 kb on + strand at 147.008 kb on + strand at 147.041 kb on + strand at 147.183 kb on + strand, within LU632_RS00700 at 147.263 kb on - strand, within LU632_RS00700 at 147.289 kb on - strand, within LU632_RS00700 at 147.293 kb on + strand, within LU632_RS00700 at 147.298 kb on - strand, within LU632_RS00700 at 147.368 kb on + strand, within LU632_RS00700 at 147.375 kb on + strand, within LU632_RS00700 at 147.376 kb on - strand, within LU632_RS00700 at 147.430 kb on - strand, within LU632_RS00700 at 147.470 kb on - strand, within LU632_RS00700 at 147.520 kb on + strand, within LU632_RS00700 at 147.520 kb on + strand, within LU632_RS00700 at 147.521 kb on - strand, within LU632_RS00700 at 147.521 kb on - strand, within LU632_RS00700 at 147.522 kb on + strand, within LU632_RS00700 at 147.523 kb on - strand, within LU632_RS00700 at 147.523 kb on - strand, within LU632_RS00700 at 147.525 kb on + strand, within LU632_RS00700 at 147.526 kb on - strand, within LU632_RS00700 at 147.535 kb on + strand, within LU632_RS00700 at 147.536 kb on - strand, within LU632_RS00700 at 147.682 kb on - strand, within LU632_RS00700 at 147.682 kb on - strand, within LU632_RS00700 at 147.717 kb on + strand, within LU632_RS00700 at 147.718 kb on - strand, within LU632_RS00700 at 147.754 kb on - strand, within LU632_RS00700 at 147.782 kb on - strand, within LU632_RS00700 at 147.788 kb on + strand, within LU632_RS00700 at 147.789 kb on - strand, within LU632_RS00700
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M2; plant location=P2 remove 145,060 - +0.6 145,149 + -0.2 145,149 + -1.9 145,222 - +0.1 145,233 + +0.2 145,314 + -2.1 145,357 + +1.2 145,363 + -0.6 145,363 + -2.4 145,478 + LU632_RS00690 0.25 -1.1 145,643 + LU632_RS00690 0.55 -1.1 145,674 + LU632_RS00690 0.60 +1.8 145,674 + LU632_RS00690 0.60 +0.9 145,700 + LU632_RS00690 0.65 -0.3 145,799 + LU632_RS00690 0.83 +2.1 145,799 + LU632_RS00690 0.83 -1.1 145,800 - LU632_RS00690 0.83 +1.4 145,800 - LU632_RS00690 0.83 +1.7 145,822 - LU632_RS00690 0.87 -1.0 145,822 - LU632_RS00690 0.87 +0.6 145,874 + -0.5 145,874 + -0.8 145,875 - -0.3 145,875 - +1.1 145,875 - -1.1 145,876 - +0.5 145,903 - +1.3 145,913 + +0.3 145,963 + -1.1 145,964 - +0.2 145,967 + -0.9 145,968 - -0.6 145,968 - -0.8 145,968 - +1.9 145,968 - +1.0 145,968 - +2.6 146,052 - -0.8 146,089 + +0.6 146,089 + +2.1 146,253 - LU632_RS00695 0.27 +0.5 146,833 - -0.8 146,909 - -0.1 146,941 - +0.2 147,008 + +0.7 147,008 + +0.2 147,041 + +0.5 147,183 + LU632_RS00700 0.11 -0.3 147,263 - LU632_RS00700 0.14 -0.1 147,289 - LU632_RS00700 0.15 -0.5 147,293 + LU632_RS00700 0.15 -0.8 147,298 - LU632_RS00700 0.15 +2.0 147,368 + LU632_RS00700 0.18 -2.6 147,375 + LU632_RS00700 0.18 +0.3 147,376 - LU632_RS00700 0.18 +0.7 147,430 - LU632_RS00700 0.20 +1.0 147,470 - LU632_RS00700 0.21 +0.6 147,520 + LU632_RS00700 0.23 -2.5 147,520 + LU632_RS00700 0.23 -3.3 147,521 - LU632_RS00700 0.23 -0.8 147,521 - LU632_RS00700 0.23 +0.1 147,522 + LU632_RS00700 0.23 +1.4 147,523 - LU632_RS00700 0.23 -0.4 147,523 - LU632_RS00700 0.23 +1.8 147,525 + LU632_RS00700 0.24 -0.2 147,526 - LU632_RS00700 0.24 +0.8 147,535 + LU632_RS00700 0.24 -1.8 147,536 - LU632_RS00700 0.24 +0.7 147,682 - LU632_RS00700 0.29 +1.8 147,682 - LU632_RS00700 0.29 +0.1 147,717 + LU632_RS00700 0.31 +0.8 147,718 - LU632_RS00700 0.31 +0.6 147,754 - LU632_RS00700 0.32 -0.0 147,782 - LU632_RS00700 0.33 +1.0 147,788 + LU632_RS00700 0.33 -1.2 147,789 - LU632_RS00700 0.34 -1.3
Or see this region's nucleotide sequence