Strain Fitness in Erwinia amylovora T8 around OLJFJH_02080

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_02075 and OLJFJH_02080 are separated by 4 nucleotidesOLJFJH_02080 and OLJFJH_02085 are separated by 92 nucleotidesOLJFJH_02085 and OLJFJH_02090 are separated by 47 nucleotides OLJFJH_02075: OLJFJH_02075 - arabinose 5-phosphate isomerase GutQ, at 365,387 to 366,352 _02075 OLJFJH_02080: OLJFJH_02080 - DNA-binding transcriptional repressor, at 366,357 to 367,124 _02080 OLJFJH_02085: OLJFJH_02085 - transcriptional regulator GutM, at 367,217 to 367,579 _02085 OLJFJH_02090: OLJFJH_02090 - sorbitol-6-phosphate dehydrogenase, at 367,627 to 368,406 _02090 Position (kb) 366 367 368Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 365.615 kb on - strand, within OLJFJH_02075at 365.630 kb on + strand, within OLJFJH_02075at 365.747 kb on - strand, within OLJFJH_02075at 365.801 kb on - strand, within OLJFJH_02075at 365.875 kb on + strand, within OLJFJH_02075at 365.876 kb on - strand, within OLJFJH_02075at 365.996 kb on - strand, within OLJFJH_02075at 366.037 kb on + strand, within OLJFJH_02075at 366.038 kb on - strand, within OLJFJH_02075at 366.060 kb on + strand, within OLJFJH_02075at 366.060 kb on + strand, within OLJFJH_02075at 366.061 kb on - strand, within OLJFJH_02075at 366.061 kb on - strand, within OLJFJH_02075at 366.067 kb on + strand, within OLJFJH_02075at 366.067 kb on + strand, within OLJFJH_02075at 366.068 kb on - strand, within OLJFJH_02075at 366.068 kb on - strand, within OLJFJH_02075at 366.068 kb on - strand, within OLJFJH_02075at 366.071 kb on + strand, within OLJFJH_02075at 366.071 kb on + strand, within OLJFJH_02075at 366.071 kb on + strand, within OLJFJH_02075at 366.071 kb on + strand, within OLJFJH_02075at 366.072 kb on - strand, within OLJFJH_02075at 366.072 kb on - strand, within OLJFJH_02075at 366.072 kb on - strand, within OLJFJH_02075at 366.072 kb on - strand, within OLJFJH_02075at 366.072 kb on - strand, within OLJFJH_02075at 366.072 kb on - strand, within OLJFJH_02075at 366.072 kb on - strand, within OLJFJH_02075at 366.072 kb on - strand, within OLJFJH_02075at 366.072 kb on - strand, within OLJFJH_02075at 366.135 kb on + strand, within OLJFJH_02075at 366.135 kb on + strand, within OLJFJH_02075at 366.136 kb on - strand, within OLJFJH_02075at 366.352 kb on + strandat 366.353 kb on - strandat 366.387 kb on - strandat 366.485 kb on + strand, within OLJFJH_02080at 366.485 kb on + strand, within OLJFJH_02080at 366.569 kb on + strand, within OLJFJH_02080at 366.614 kb on + strand, within OLJFJH_02080at 366.799 kb on + strand, within OLJFJH_02080at 366.950 kb on + strand, within OLJFJH_02080at 366.967 kb on + strand, within OLJFJH_02080at 366.968 kb on - strand, within OLJFJH_02080at 367.034 kb on + strand, within OLJFJH_02080at 367.060 kb on - strandat 367.152 kb on - strandat 367.152 kb on - strandat 367.196 kb on + strandat 367.280 kb on + strand, within OLJFJH_02085at 367.280 kb on + strand, within OLJFJH_02085at 367.521 kb on - strand, within OLJFJH_02085at 367.532 kb on + strand, within OLJFJH_02085at 367.565 kb on - strandat 367.579 kb on + strandat 367.579 kb on + strandat 367.717 kb on + strand, within OLJFJH_02090at 367.717 kb on + strand, within OLJFJH_02090at 367.717 kb on + strand, within OLJFJH_02090at 367.717 kb on + strand, within OLJFJH_02090at 367.764 kb on - strand, within OLJFJH_02090at 367.764 kb on - strand, within OLJFJH_02090at 367.808 kb on + strand, within OLJFJH_02090at 367.842 kb on + strand, within OLJFJH_02090at 367.842 kb on + strand, within OLJFJH_02090at 367.843 kb on - strand, within OLJFJH_02090at 367.843 kb on - strand, within OLJFJH_02090at 367.870 kb on + strand, within OLJFJH_02090at 367.870 kb on + strand, within OLJFJH_02090at 367.871 kb on - strand, within OLJFJH_02090at 367.878 kb on + strand, within OLJFJH_02090at 367.879 kb on - strand, within OLJFJH_02090at 367.956 kb on + strand, within OLJFJH_02090at 367.956 kb on + strand, within OLJFJH_02090at 367.956 kb on + strand, within OLJFJH_02090at 367.956 kb on + strand, within OLJFJH_02090at 367.956 kb on + strand, within OLJFJH_02090at 367.956 kb on + strand, within OLJFJH_02090at 367.957 kb on - strand, within OLJFJH_02090at 367.957 kb on - strand, within OLJFJH_02090at 367.983 kb on + strand, within OLJFJH_02090at 368.118 kb on + strand, within OLJFJH_02090

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-5
remove
365,615 - OLJFJH_02075 0.24 -0.3
365,630 + OLJFJH_02075 0.25 -0.1
365,747 - OLJFJH_02075 0.37 +0.2
365,801 - OLJFJH_02075 0.43 +0.4
365,875 + OLJFJH_02075 0.51 -0.4
365,876 - OLJFJH_02075 0.51 +0.3
365,996 - OLJFJH_02075 0.63 -0.7
366,037 + OLJFJH_02075 0.67 -0.1
366,038 - OLJFJH_02075 0.67 -1.8
366,060 + OLJFJH_02075 0.70 +6.9
366,060 + OLJFJH_02075 0.70 +0.0
366,061 - OLJFJH_02075 0.70 +0.0
366,061 - OLJFJH_02075 0.70 +0.3
366,067 + OLJFJH_02075 0.70 -0.9
366,067 + OLJFJH_02075 0.70 -0.5
366,068 - OLJFJH_02075 0.70 -0.1
366,068 - OLJFJH_02075 0.70 +1.2
366,068 - OLJFJH_02075 0.70 -0.4
366,071 + OLJFJH_02075 0.71 -0.2
366,071 + OLJFJH_02075 0.71 +0.8
366,071 + OLJFJH_02075 0.71 -0.6
366,071 + OLJFJH_02075 0.71 +0.2
366,072 - OLJFJH_02075 0.71 +0.0
366,072 - OLJFJH_02075 0.71 -0.6
366,072 - OLJFJH_02075 0.71 +0.4
366,072 - OLJFJH_02075 0.71 +0.2
366,072 - OLJFJH_02075 0.71 -0.3
366,072 - OLJFJH_02075 0.71 -0.2
366,072 - OLJFJH_02075 0.71 +0.1
366,072 - OLJFJH_02075 0.71 -0.1
366,072 - OLJFJH_02075 0.71 +0.2
366,135 + OLJFJH_02075 0.77 +1.5
366,135 + OLJFJH_02075 0.77 +0.2
366,136 - OLJFJH_02075 0.78 +0.4
366,352 + -1.2
366,353 - +0.5
366,387 - +1.9
366,485 + OLJFJH_02080 0.17 +1.2
366,485 + OLJFJH_02080 0.17 +1.9
366,569 + OLJFJH_02080 0.28 +1.9
366,614 + OLJFJH_02080 0.33 +2.0
366,799 + OLJFJH_02080 0.58 +1.6
366,950 + OLJFJH_02080 0.77 +1.4
366,967 + OLJFJH_02080 0.79 +1.5
366,968 - OLJFJH_02080 0.80 +2.1
367,034 + OLJFJH_02080 0.88 +2.2
367,060 - +0.8
367,152 - +1.1
367,152 - +2.2
367,196 + +2.3
367,280 + OLJFJH_02085 0.17 +0.8
367,280 + OLJFJH_02085 0.17 -0.6
367,521 - OLJFJH_02085 0.84 +0.1
367,532 + OLJFJH_02085 0.87 -0.1
367,565 - +0.3
367,579 + -0.1
367,579 + +1.2
367,717 + OLJFJH_02090 0.12 -1.0
367,717 + OLJFJH_02090 0.12 -1.2
367,717 + OLJFJH_02090 0.12 -0.9
367,717 + OLJFJH_02090 0.12 +0.2
367,764 - OLJFJH_02090 0.18 -2.3
367,764 - OLJFJH_02090 0.18 -0.7
367,808 + OLJFJH_02090 0.23 -2.2
367,842 + OLJFJH_02090 0.28 -1.2
367,842 + OLJFJH_02090 0.28 -0.6
367,843 - OLJFJH_02090 0.28 -0.2
367,843 - OLJFJH_02090 0.28 -1.5
367,870 + OLJFJH_02090 0.31 -1.4
367,870 + OLJFJH_02090 0.31 +0.5
367,871 - OLJFJH_02090 0.31 -0.3
367,878 + OLJFJH_02090 0.32 -0.3
367,879 - OLJFJH_02090 0.32 -0.5
367,956 + OLJFJH_02090 0.42 -1.1
367,956 + OLJFJH_02090 0.42 -0.6
367,956 + OLJFJH_02090 0.42 -0.9
367,956 + OLJFJH_02090 0.42 -1.4
367,956 + OLJFJH_02090 0.42 -1.1
367,956 + OLJFJH_02090 0.42 -0.8
367,957 - OLJFJH_02090 0.42 -0.9
367,957 - OLJFJH_02090 0.42 -0.4
367,983 + OLJFJH_02090 0.46 -1.0
368,118 + OLJFJH_02090 0.63 -0.7

Or see this region's nucleotide sequence