Strain Fitness in Erwinia tracheiphila SCR3

Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS26000

Experiment: plant=Melon; plant sample=M1; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	plant=Melon; plant sample=M1; plant location=P2
				remove
9,506	+			+2.9
9,574	+	LU632_RS25990	0.19	-1.6
9,574	+	LU632_RS25990	0.19	-1.9
9,595	+	LU632_RS25990	0.24	+1.0
9,595	+	LU632_RS25990	0.24	-0.3
9,595	+	LU632_RS25990	0.24	-1.1
9,595	+	LU632_RS25990	0.24	+1.8
9,595	+	LU632_RS25990	0.24	-1.3
9,596	-	LU632_RS25990	0.25	+0.1
9,596	-	LU632_RS25990	0.25	+1.5
9,596	-	LU632_RS25990	0.25	-0.9
9,596	-	LU632_RS25990	0.25	-0.8
9,596	-	LU632_RS25990	0.25	+0.3
9,596	-	LU632_RS25990	0.25	-0.2
9,596	-	LU632_RS25990	0.25	-2.2
9,596	-	LU632_RS25990	0.25	-2.3
9,601	+	LU632_RS25990	0.26	-3.9
9,602	-	LU632_RS25990	0.26	+0.3
9,628	+	LU632_RS25990	0.32	-0.7
9,628	+	LU632_RS25990	0.32	+1.9
9,699	+	LU632_RS25990	0.50	-2.6
9,751	+	LU632_RS25990	0.62	-2.5
9,751	+	LU632_RS25990	0.62	+3.3
9,751	+	LU632_RS25990	0.62	-1.6
9,752	-	LU632_RS25990	0.62	+0.2
9,752	-	LU632_RS25990	0.62	+2.8
9,752	-	LU632_RS25990	0.62	-1.4
9,752	-	LU632_RS25990	0.62	+2.7
9,752	-	LU632_RS25990	0.62	+0.8
9,754	+	LU632_RS25990	0.63	-0.7
9,754	+	LU632_RS25990	0.63	-1.3
9,790	+	LU632_RS25990	0.71	+0.7
9,828	-	LU632_RS25990	0.81	-0.7
9,895	+			-0.6
9,899	-			-0.6
9,899	-			-0.7
9,910	+			+0.0
9,910	+			-1.7
9,910	+			-2.9
9,910	+			+1.6
9,911	-			-1.0
9,911	-			+4.3
9,911	-			+0.7
9,922	+			+0.7
9,923	-			-0.7
9,923	-			+0.1
9,928	+			+3.1
9,929	-			-1.3
10,012	-	LU632_RS25995	0.22	-0.2
10,112	+	LU632_RS25995	0.44	+1.5
10,123	+	LU632_RS25995	0.47	-3.1
10,124	-	LU632_RS25995	0.47	+0.5
10,124	-	LU632_RS25995	0.47	+1.7
10,132	-	LU632_RS25995	0.49	-3.1
10,135	+	LU632_RS25995	0.49	+1.6
10,136	-	LU632_RS25995	0.50	+4.3
10,158	+	LU632_RS25995	0.55	-1.1
10,158	+	LU632_RS25995	0.55	+0.0
10,158	+	LU632_RS25995	0.55	-2.1
10,158	+	LU632_RS25995	0.55	-1.3
10,254	+	LU632_RS25995	0.76	+0.5
10,254	+	LU632_RS25995	0.76	+0.4
10,317	+			+1.9
10,318	-			+0.2
10,318	-			+0.8
10,344	+			-0.7
10,344	+			-0.2
10,344	+			+0.4
10,344	+			-1.7
10,344	+			+3.4
10,345	-			-0.2
10,345	-			-0.7
10,345	-			-1.7
10,345	-			-0.3
10,345	-			+0.9
10,346	+			-1.3
10,346	+			+2.3
10,346	+			+3.3
10,346	+			-3.1
10,347	-			-3.4
10,347	-			-1.2
10,350	+			-1.4
10,350	+			+0.8
10,350	+			-0.7
10,350	+			-0.1
10,350	+			-0.7
10,351	-			+1.5
10,351	-			+0.7
10,450	+			-0.0
10,450	+			-1.3
10,450	+			+0.9
10,450	+			-1.0
10,498	-			-0.5
10,503	+			+0.9
10,503	+			+0.3
10,503	+			+1.2
10,503	+			+1.6
10,503	+			+2.3
10,503	+			-1.9
10,503	+			-0.4
10,503	+			-1.8
10,503	+			-0.8
10,503	+			+1.5
10,503	+			-0.5
10,503	+			+0.2
10,504	-			-0.1
10,504	-			+1.2
10,504	-			-0.5
10,504	-			+1.3
10,506	+			+2.2
10,614	-	LU632_RS26000	0.16	-1.9
10,625	+	LU632_RS26000	0.17	-0.1
10,633	+	LU632_RS26000	0.18	-1.0
10,674	+	LU632_RS26000	0.21	+2.5
10,674	+	LU632_RS26000	0.21	-2.5
10,674	+	LU632_RS26000	0.21	-1.4
10,674	+	LU632_RS26000	0.21	-1.6
10,674	+	LU632_RS26000	0.21	+2.6
10,674	+	LU632_RS26000	0.21	+0.3
10,674	+	LU632_RS26000	0.21	-0.1
10,674	+	LU632_RS26000	0.21	+3.7
10,674	+	LU632_RS26000	0.21	-0.4
10,675	-	LU632_RS26000	0.21	+4.2
10,675	-	LU632_RS26000	0.21	+1.5
10,675	-	LU632_RS26000	0.21	-3.5
10,684	+	LU632_RS26000	0.21	-0.2
10,685	-	LU632_RS26000	0.21	-0.7
10,686	+	LU632_RS26000	0.21	-2.3
10,686	+	LU632_RS26000	0.21	-1.1
10,686	+	LU632_RS26000	0.21	+0.1
10,686	+	LU632_RS26000	0.21	-0.2
10,686	+	LU632_RS26000	0.21	-1.7
10,686	+	LU632_RS26000	0.21	-0.7
10,687	-	LU632_RS26000	0.21	-1.0
10,687	-	LU632_RS26000	0.21	-2.1
10,687	-	LU632_RS26000	0.21	+0.3
10,687	-	LU632_RS26000	0.21	-0.9
10,687	-	LU632_RS26000	0.21	-0.2
10,705	-	LU632_RS26000	0.23	-0.3
10,705	-	LU632_RS26000	0.23	+0.6
10,705	-	LU632_RS26000	0.23	+4.5
10,774	+	LU632_RS26000	0.27	-3.0
10,783	+	LU632_RS26000	0.28	-3.7
10,794	+	LU632_RS26000	0.29	-0.7
10,795	-	LU632_RS26000	0.29	-0.3
10,795	-	LU632_RS26000	0.29	+1.0
10,795	-	LU632_RS26000	0.29	+0.7
10,928	-	LU632_RS26000	0.38	-0.1
10,977	+	LU632_RS26000	0.41	+0.3
10,977	+	LU632_RS26000	0.41	+0.9
10,978	-	LU632_RS26000	0.41	+2.7
10,998	+	LU632_RS26000	0.42	+1.3
10,999	-	LU632_RS26000	0.43	-0.7
10,999	-	LU632_RS26000	0.43	-1.5
11,026	+	LU632_RS26000	0.44	-1.7
11,048	+	LU632_RS26000	0.46	-0.7
11,056	+	LU632_RS26000	0.46	+0.3
11,109	+	LU632_RS26000	0.50	-0.6
11,109	+	LU632_RS26000	0.50	+2.1
11,109	+	LU632_RS26000	0.50	-3.3
11,109	+	LU632_RS26000	0.50	+1.1
11,109	+	LU632_RS26000	0.50	+0.1
11,109	+	LU632_RS26000	0.50	-2.0
11,110	-	LU632_RS26000	0.50	-1.6
11,110	-	LU632_RS26000	0.50	+0.4
11,110	-	LU632_RS26000	0.50	+0.0
11,110	-	LU632_RS26000	0.50	+1.4
11,110	-	LU632_RS26000	0.50	-0.3
11,110	-	LU632_RS26000	0.50	-2.1
11,110	-	LU632_RS26000	0.50	+1.7
11,110	-	LU632_RS26000	0.50	-0.8
11,110	-	LU632_RS26000	0.50	-1.4
11,110	-	LU632_RS26000	0.50	-0.7
11,110	-	LU632_RS26000	0.50	+3.1
11,118	-	LU632_RS26000	0.51	-0.7
11,166	+	LU632_RS26000	0.54	-2.7
11,167	-	LU632_RS26000	0.54	+1.8
11,494	+	LU632_RS26000	0.76	+0.2
11,604	+	LU632_RS26000	0.83	-0.3
11,604	+	LU632_RS26000	0.83	-0.8
11,604	+	LU632_RS26000	0.83	-0.8
11,605	-	LU632_RS26000	0.84	+1.9
11,605	-	LU632_RS26000	0.84	-0.9
11,605	-	LU632_RS26000	0.84	-1.6
11,634	+	LU632_RS26000	0.85	-0.1
11,635	-	LU632_RS26000	0.86	-0.0
11,635	-	LU632_RS26000	0.86	+1.3
11,635	-	LU632_RS26000	0.86	-0.2
11,638	-	LU632_RS26000	0.86	-1.1
11,656	-	LU632_RS26000	0.87	-0.4
11,656	-	LU632_RS26000	0.87	+2.2
11,706	+			+0.3
11,848	+			-1.1
11,848	+			-1.5
11,848	+			+0.6
11,848	+			+0.6
11,849	-			+0.4
11,849	-			+1.9
11,849	-			+0.2
11,849	-			-2.6
11,849	-			-0.1
11,852	+			-1.0
11,852	+			+0.1
11,852	+			-4.5
11,852	+			-0.6
11,852	+			-1.1
11,853	-			+1.6
11,853	-			-1.6
11,853	-			-0.4
11,853	-			-1.7
11,853	-			-0.4
11,853	-			-1.6
11,853	-			-0.5
11,853	-			+1.3
11,882	-			-0.3
11,900	+			-2.7
11,900	+			-1.0
11,904	+			+2.3
11,905	-			+2.3
11,934	+	LU632_RS26005	0.15	+0.2
11,937	+	LU632_RS26005	0.16	-2.6
11,938	-	LU632_RS26005	0.16	-0.7
11,964	+	LU632_RS26005	0.20	-0.0
11,965	-	LU632_RS26005	0.21	-1.7
12,013	-	LU632_RS26005	0.29	+2.7
12,037	-	LU632_RS26005	0.34	-2.8
12,099	-	LU632_RS26005	0.45	+1.3
12,099	-	LU632_RS26005	0.45	-0.7
12,171	+	LU632_RS26005	0.58	-0.0
12,195	+	LU632_RS26005	0.62	+1.0
12,274	+	LU632_RS26005	0.77	-0.3
12,377	+			-1.7
12,377	+			-2.4
12,434	-			-0.3
12,434	-			-1.3
12,461	+	LU632_RS26010	0.15	+0.3
12,461	+	LU632_RS26010	0.15	+1.0
12,461	+	LU632_RS26010	0.15	-0.3
12,462	-	LU632_RS26010	0.15	-0.1
12,462	-	LU632_RS26010	0.15	+0.3
12,466	+	LU632_RS26010	0.16	+0.3
12,466	+	LU632_RS26010	0.16	-1.5
12,467	-	LU632_RS26010	0.17	-0.2
12,488	+	LU632_RS26010	0.22	-2.9
12,488	+	LU632_RS26010	0.22	+0.5
12,489	-	LU632_RS26010	0.23	-2.4
12,490	+	LU632_RS26010	0.23	-2.2
12,516	-	LU632_RS26010	0.30	-0.9
12,533	+	LU632_RS26010	0.34	-3.3
12,533	+	LU632_RS26010	0.34	-0.7
12,534	-	LU632_RS26010	0.35	+0.2
12,651	+	LU632_RS26010	0.66	-1.6
12,665	+	LU632_RS26010	0.70	+0.8
12,665	+	LU632_RS26010	0.70	-0.3
12,665	+	LU632_RS26010	0.70	+0.1
12,665	+	LU632_RS26010	0.70	-0.3
12,666	-	LU632_RS26010	0.70	-1.3
12,666	-	LU632_RS26010	0.70	-1.6
12,666	-	LU632_RS26010	0.70	+1.1
12,666	-	LU632_RS26010	0.70	+0.3
12,666	-	LU632_RS26010	0.70	+0.1
12,666	-	LU632_RS26010	0.70	-0.7
12,666	-	LU632_RS26010	0.70	-0.7
12,708	+	LU632_RS26010	0.81	-0.9
12,708	+	LU632_RS26010	0.81	-3.0
12,795	+			-1.3
12,795	+			-0.1
12,796	-			-1.7
12,796	-			-1.2
12,796	-			-3.0
12,796	-			-1.0
12,796	-			-1.6
12,796	-			-2.4
12,796	-			-1.2
12,796	-			+0.9
12,796	-			-0.3
12,813	+			-1.7

Or see this region's nucleotide sequence