Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17085

Experiment: plant=Melon; plant sample=M1; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M1; plant location=P2
3,216,143	+		LU632_RS17075	0.77	-2.7
3,216,143	+		LU632_RS17075	0.77	-1.6
3,216,144	-		LU632_RS17075	0.77	+0.7
3,216,144	-		LU632_RS17075	0.77	-0.8
3,216,144	-		LU632_RS17075	0.77	+0.1
3,216,163	+		LU632_RS17075	0.79	+1.7
3,216,164	-		LU632_RS17075	0.79	+1.0
3,216,186	-		LU632_RS17075	0.81	-1.0
3,216,218	-		LU632_RS17075	0.84	-2.4
3,216,275	-		LU632_RS17075	0.90	+0.3
3,216,388	-				+0.4
3,216,399	+				+1.7
3,216,452	+				-1.1
3,216,468	+				+1.0
3,216,577	-		LU632_RS17080	0.24	+0.1
3,216,577	-		LU632_RS17080	0.24	+1.2
3,216,601	+		LU632_RS17080	0.28	-1.3
3,216,625	+		LU632_RS17080	0.32	-0.3
3,216,688	-		LU632_RS17080	0.42	+3.6
3,216,689	+		LU632_RS17080	0.42	+0.8
3,216,714	+		LU632_RS17080	0.46	-1.3
3,216,714	+		LU632_RS17080	0.46	-0.1
3,216,714	+		LU632_RS17080	0.46	-0.7
3,216,715	-		LU632_RS17080	0.47	-0.3
3,216,715	-		LU632_RS17080	0.47	-0.1
3,216,715	-		LU632_RS17080	0.47	-1.1
3,217,013	+				+1.5
3,217,014	-				+1.6
3,217,014	-				+0.7
3,217,101	-				-1.0
3,217,352	+		LU632_RS17085	0.27	+0.3
3,217,353	-		LU632_RS17085	0.28	+2.0
3,217,399	+		LU632_RS17085	0.32	+2.0
3,217,399	+		LU632_RS17085	0.32	+5.4
3,217,400	-		LU632_RS17085	0.32	-0.8
3,217,400	-		LU632_RS17085	0.32	-1.7
3,217,400	-		LU632_RS17085	0.32	+3.5
3,217,400	-		LU632_RS17085	0.32	+0.0
3,217,400	-		LU632_RS17085	0.32	-0.6
3,217,413	-		LU632_RS17085	0.33	-0.4
3,217,597	+		LU632_RS17085	0.49	-0.9
3,217,845	+		LU632_RS17085	0.70	+2.6
3,217,846	-		LU632_RS17085	0.70	-0.3
3,217,898	+		LU632_RS17085	0.75	+0.4
3,217,914	-		LU632_RS17085	0.76	+0.6
3,217,961	+		LU632_RS17085	0.80	-1.7
3,218,078	+				-1.3
3,218,158	-				-0.3
3,218,171	+				-0.7
3,218,171	+				+1.2
3,218,172	-				-0.1
3,218,183	-				+0.2
3,218,355	-		LU632_RS17090	0.42	-0.1
3,218,355	-		LU632_RS17090	0.42	+3.0
3,218,608	-				-1.4
3,218,707	+		LU632_RS17095	0.14	-2.6
3,218,708	-		LU632_RS17095	0.14	-0.8
3,218,753	+		LU632_RS17095	0.22	+0.4
3,218,753	+		LU632_RS17095	0.22	-1.2
3,218,819	+		LU632_RS17095	0.33	+0.0
3,218,820	-		LU632_RS17095	0.33	-0.3
3,218,921	+		LU632_RS17095	0.50	-1.2
3,218,921	+		LU632_RS17095	0.50	-0.3
3,219,105	-		LU632_RS17095	0.82	+0.2
3,219,105	-		LU632_RS17095	0.82	+0.3
3,219,105	-		LU632_RS17095	0.82	+0.1
3,219,105	-		LU632_RS17095	0.82	-1.6
3,219,179	+				-1.2
3,219,179	+				+1.3
3,219,180	-				+2.1
3,219,180	-				+2.2
3,219,189	+				-0.8
3,219,189	+				+2.0