Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09895

Experiment: plant=Melon; plant sample=M1; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M1; plant location=P2
1,887,247	+	ldtD	LU632_RS09885	0.87	+0.3
1,887,293	+	ldtD	LU632_RS09885	0.90	+2.1
1,887,294	-	ldtD	LU632_RS09885	0.90	-0.4
1,887,312	+				+0.9
1,887,312	+				-0.7
1,887,313	-				-1.4
1,887,313	-				+0.8
1,887,314	+				-0.7
1,887,314	+				+0.3
1,887,314	+				-0.2
1,887,314	+				-2.1
1,887,314	+				+0.6
1,887,315	-				+0.5
1,887,315	-				+2.4
1,887,348	+				-1.7
1,887,352	-				-0.4
1,887,352	-				+0.9
1,887,417	-				+0.6
1,887,480	-				+0.1
1,887,480	-				+1.9
1,887,494	-				+0.6
1,887,494	-				-0.2
1,887,499	-				+1.6
1,887,536	+				+0.6
1,887,536	+				+1.2
1,887,536	+				-0.8
1,887,546	+				-1.5
1,887,641	+				-1.3
1,887,659	+				+2.8
1,887,778	+		LU632_RS09890	0.21	+2.2
1,887,785	-		LU632_RS09890	0.23	-1.0
1,887,922	+		LU632_RS09890	0.48	-0.1
1,887,922	+		LU632_RS09890	0.48	+1.6
1,887,923	-		LU632_RS09890	0.48	-0.6
1,887,923	-		LU632_RS09890	0.48	-1.5
1,887,923	-		LU632_RS09890	0.48	-0.8
1,888,053	+		LU632_RS09890	0.72	+1.2
1,888,054	-		LU632_RS09890	0.72	-1.9
1,888,054	-		LU632_RS09890	0.72	+0.1
1,888,058	+		LU632_RS09890	0.72	+0.1
1,888,058	+		LU632_RS09890	0.72	+0.5
1,888,152	+		LU632_RS09890	0.90	-0.7
1,888,178	+				+1.5
1,888,179	-				+0.3
1,888,236	+				+2.8
1,888,246	+				-1.0
1,888,246	+				+1.4
1,888,246	+				-1.7
1,888,247	-				-0.2
1,888,247	-				+0.7
1,888,317	+		LU632_RS09895	0.11	-0.4
1,888,318	-		LU632_RS09895	0.11	-1.3
1,888,349	-		LU632_RS09895	0.16	-0.0
1,888,392	+		LU632_RS09895	0.23	-0.7
1,888,393	-		LU632_RS09895	0.23	+1.2
1,888,423	-		LU632_RS09895	0.28	+2.1
1,888,423	-		LU632_RS09895	0.28	-0.8
1,888,522	-		LU632_RS09895	0.44	+0.6
1,888,610	-		LU632_RS09895	0.58	-1.1
1,888,762	+		LU632_RS09895	0.82	+0.3
1,888,763	-		LU632_RS09895	0.82	+1.9
1,888,763	-		LU632_RS09895	0.82	+0.6
1,888,772	-		LU632_RS09895	0.83	+0.5
1,888,875	-				+0.1
1,888,896	+				-0.1
1,888,997	+				-1.1
1,888,998	-				-2.2
1,888,998	-				-0.4
1,889,006	-				-0.2
1,889,011	-				+1.2
1,889,025	-				-1.3
1,889,032	+				+0.8
1,889,032	+				+0.3
1,889,032	+				-0.4
1,889,105	+		LU632_RS09900	0.21	-0.4
1,889,109	+		LU632_RS09900	0.22	-2.6
1,889,123	-		LU632_RS09900	0.25	-1.1
1,889,129	+		LU632_RS09900	0.26	-0.1
1,889,129	+		LU632_RS09900	0.26	-0.4
1,889,129	+		LU632_RS09900	0.26	-0.0
1,889,129	+		LU632_RS09900	0.26	-2.5
1,889,130	-		LU632_RS09900	0.27	+2.3
1,889,130	-		LU632_RS09900	0.27	-0.4
1,889,130	-		LU632_RS09900	0.27	-1.1
1,889,130	-		LU632_RS09900	0.27	+0.9
1,889,130	-		LU632_RS09900	0.27	+0.8
1,889,221	+		LU632_RS09900	0.47	+0.4
1,889,418	+				+1.4
1,889,425	+				+1.0
1,889,480	+				+2.3
1,889,480	+				-0.6
1,889,481	-				+0.9
1,889,481	-				-1.7
1,889,534	+				+2.3
1,889,534	+				+0.9
1,889,534	+				-0.7
1,889,535	-				+4.1
1,889,535	-				+1.2
1,889,535	-				-0.9
1,889,537	+				-1.5
1,889,538	-				+1.9
1,889,540	+				+0.3
1,889,540	+				+2.5
1,889,540	+				+1.2
1,889,540	+				+0.4
1,889,541	-				-0.3
1,889,560	-				+0.1
1,889,693	-				-0.7
1,889,702	+				+1.2
1,889,702	+				-0.9
1,889,706	+				+0.6
1,889,706	+				+0.3
1,889,794	+				+1.0