Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05525

Experiment: plant=Melon; plant sample=M1; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M1; plant location=P2
1,069,331	-	tkt	LU632_RS05520	0.76	-1.7
1,069,331	-	tkt	LU632_RS05520	0.76	-1.4
1,069,438	+	tkt	LU632_RS05520	0.81	-1.2
1,069,438	+	tkt	LU632_RS05520	0.81	+0.7
1,069,438	+	tkt	LU632_RS05520	0.81	-1.0
1,069,438	+	tkt	LU632_RS05520	0.81	-1.4
1,069,439	-	tkt	LU632_RS05520	0.81	-1.1
1,069,564	-	tkt	LU632_RS05520	0.88	+3.0
1,069,572	+	tkt	LU632_RS05520	0.88	+4.1
1,069,681	+				-1.3
1,069,681	+				-1.3
1,069,682	-				+1.3
1,069,807	+				-1.0
1,069,807	+				-1.3
1,069,882	+				+0.5
1,069,883	-				+2.1
1,069,975	+				-1.8
1,069,975	+				-0.4
1,070,003	+				-0.3
1,070,052	+				+0.2
1,070,053	-				-1.4
1,070,071	+				+2.5
1,070,072	-				-1.1
1,070,073	+				-1.3
1,070,073	+				-0.7
1,070,073	+				-1.2
1,070,073	+				+0.0
1,070,074	-				-0.3
1,070,074	-				+3.0
1,070,092	+				+1.8
1,070,121	-				+0.9
1,070,131	+				-1.7
1,070,154	-				+0.2
1,070,184	+				+0.6
1,070,272	+				+0.4
1,070,272	+				-1.4
1,070,273	-				+1.2
1,070,273	-				-1.1
1,070,273	-				+0.0
1,070,274	+				-0.5
1,070,275	-				-1.4
1,070,275	-				-0.3
1,070,330	+				+0.3
1,070,351	+				-1.0
1,070,351	+				-1.0
1,070,351	+				-0.4
1,070,353	+				+1.1
1,070,354	-				+0.2
1,070,372	-				+1.0
1,070,413	+		LU632_RS05525	0.15	+1.0
1,070,611	+		LU632_RS05525	0.52	-1.3
1,070,612	-		LU632_RS05525	0.52	+1.8
1,070,659	-		LU632_RS05525	0.61	-0.5
1,070,667	+		LU632_RS05525	0.62	+0.5
1,070,667	+		LU632_RS05525	0.62	+0.7
1,070,722	-		LU632_RS05525	0.72	+0.4
1,070,731	+		LU632_RS05525	0.74	-0.6
1,070,731	+		LU632_RS05525	0.74	-1.6
1,070,731	+		LU632_RS05525	0.74	-1.1
1,070,731	+		LU632_RS05525	0.74	-0.3
1,070,731	+		LU632_RS05525	0.74	+1.6
1,070,731	+		LU632_RS05525	0.74	-0.6
1,070,732	-		LU632_RS05525	0.74	+0.4
1,070,732	-		LU632_RS05525	0.74	-1.5
1,070,847	+				+0.3
1,070,890	+		LU632_RS05530	0.15	-1.5
1,071,007	+		LU632_RS05530	0.82	-0.1
1,071,007	-		LU632_RS05530	0.82	-0.9
1,071,008	+		LU632_RS05530	0.83	-0.4
1,071,008	-		LU632_RS05530	0.83	+1.4
1,071,011	-		LU632_RS05530	0.84	+0.0
1,071,030	+				-1.0
1,071,054	+				-0.7
1,071,055	-				-0.0
1,071,230	-				+2.4
1,071,235	+				+1.1
1,071,236	-				-1.0
1,071,240	-				-1.3
1,071,270	+				-0.8
1,071,270	+				-0.8
1,071,277	+				-0.5
1,071,348	+				+1.4
1,071,410	+				-0.5
1,071,414	+				+0.5
1,071,414	+				-1.0
1,071,497	+				-1.8
1,071,498	-				-0.8
1,071,562	-				+0.8
1,071,645	+	epd	LU632_RS05535	0.14	+0.0
1,071,645	+	epd	LU632_RS05535	0.14	+2.0
1,071,645	+	epd	LU632_RS05535	0.14	+0.2
1,071,646	-	epd	LU632_RS05535	0.14	-0.5
1,071,646	-	epd	LU632_RS05535	0.14	+1.6
1,071,646	-	epd	LU632_RS05535	0.14	+0.2
1,071,646	-	epd	LU632_RS05535	0.14	+0.0
1,071,646	-	epd	LU632_RS05535	0.14	-0.5
1,071,794	+	epd	LU632_RS05535	0.28	+2.0
1,071,805	-	epd	LU632_RS05535	0.29	+0.5