Experiment: plant=Melon; plant sample=M1; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04860 and LU632_RS04865 overlap by 4 nucleotides LU632_RS04865 and LU632_RS04870 are separated by 90 nucleotides LU632_RS04870 and LU632_RS04875 are separated by 176 nucleotides LU632_RS04875 and LU632_RS04880 are separated by 13 nucleotides
LU632_RS04860: LU632_RS04860 - DUF2857 domain-containing protein, at 950,585 to 951,193
_RS04860
LU632_RS04865: LU632_RS04865 - hypothetical protein, at 951,190 to 951,438
_RS04865
LU632_RS04870: LU632_RS04870 - STY4528 family pathogenicity island replication protein, at 951,529 to 952,767
_RS04870
LU632_RS04875: LU632_RS04875 - TIGR03761 family integrating conjugative element protein, at 952,944 to 953,699
_RS04875
LU632_RS04880: LU632_RS04880 - DNA topoisomerase III, at 953,713 to 955,435
_RS04880
Position (kb) 951
952
953 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 950.535 kb on + strand at 950.535 kb on + strand at 950.536 kb on - strand at 950.536 kb on - strand at 950.536 kb on - strand at 950.536 kb on - strand at 950.544 kb on - strand at 950.544 kb on - strand at 950.741 kb on + strand, within LU632_RS04860 at 950.741 kb on + strand, within LU632_RS04860 at 950.742 kb on - strand, within LU632_RS04860 at 950.804 kb on - strand, within LU632_RS04860 at 950.836 kb on + strand, within LU632_RS04860 at 950.944 kb on + strand, within LU632_RS04860 at 950.971 kb on + strand, within LU632_RS04860 at 951.097 kb on + strand, within LU632_RS04860 at 951.097 kb on + strand, within LU632_RS04860 at 951.097 kb on + strand, within LU632_RS04860 at 951.255 kb on + strand, within LU632_RS04865 at 951.280 kb on + strand, within LU632_RS04865 at 951.281 kb on - strand, within LU632_RS04865 at 951.297 kb on + strand, within LU632_RS04865 at 951.301 kb on + strand, within LU632_RS04865 at 951.302 kb on - strand, within LU632_RS04865 at 951.302 kb on - strand, within LU632_RS04865 at 951.331 kb on + strand, within LU632_RS04865 at 951.346 kb on - strand, within LU632_RS04865 at 951.396 kb on - strand, within LU632_RS04865 at 951.396 kb on - strand, within LU632_RS04865 at 951.436 kb on + strand at 951.436 kb on + strand at 951.436 kb on + strand at 951.474 kb on + strand at 951.475 kb on - strand at 951.475 kb on - strand at 951.475 kb on - strand at 951.475 kb on - strand at 951.475 kb on - strand at 951.475 kb on - strand at 951.516 kb on + strand at 951.553 kb on - strand at 951.553 kb on - strand at 951.555 kb on - strand at 951.561 kb on + strand at 951.562 kb on - strand at 951.733 kb on + strand, within LU632_RS04870 at 951.744 kb on + strand, within LU632_RS04870 at 951.744 kb on + strand, within LU632_RS04870 at 951.745 kb on - strand, within LU632_RS04870 at 951.770 kb on - strand, within LU632_RS04870 at 951.810 kb on + strand, within LU632_RS04870 at 951.811 kb on - strand, within LU632_RS04870 at 951.918 kb on + strand, within LU632_RS04870 at 951.918 kb on + strand, within LU632_RS04870 at 951.918 kb on + strand, within LU632_RS04870 at 951.918 kb on + strand, within LU632_RS04870 at 951.919 kb on - strand, within LU632_RS04870 at 951.990 kb on + strand, within LU632_RS04870 at 952.011 kb on + strand, within LU632_RS04870 at 952.169 kb on + strand, within LU632_RS04870 at 952.170 kb on - strand, within LU632_RS04870 at 952.170 kb on - strand, within LU632_RS04870 at 952.277 kb on + strand, within LU632_RS04870 at 952.278 kb on - strand, within LU632_RS04870 at 952.348 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.353 kb on - strand, within LU632_RS04870 at 952.697 kb on + strand at 952.698 kb on - strand at 952.724 kb on - strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.756 kb on - strand at 952.756 kb on - strand at 952.756 kb on - strand at 952.820 kb on - strand at 952.824 kb on - strand at 952.940 kb on - strand at 952.940 kb on - strand at 952.941 kb on + strand at 952.941 kb on + strand at 952.941 kb on + strand at 952.941 kb on + strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.943 kb on + strand at 953.049 kb on + strand, within LU632_RS04875 at 953.090 kb on + strand, within LU632_RS04875 at 953.136 kb on - strand, within LU632_RS04875 at 953.189 kb on + strand, within LU632_RS04875 at 953.259 kb on - strand, within LU632_RS04875 at 953.259 kb on - strand, within LU632_RS04875 at 953.443 kb on - strand, within LU632_RS04875 at 953.476 kb on - strand, within LU632_RS04875 at 953.512 kb on - strand, within LU632_RS04875 at 953.529 kb on + strand, within LU632_RS04875 at 953.530 kb on - strand, within LU632_RS04875 at 953.530 kb on - strand, within LU632_RS04875 at 953.532 kb on + strand, within LU632_RS04875 at 953.532 kb on + strand, within LU632_RS04875 at 953.533 kb on - strand, within LU632_RS04875 at 953.533 kb on - strand, within LU632_RS04875 at 953.622 kb on - strand, within LU632_RS04875 at 953.722 kb on + strand at 953.722 kb on + strand at 953.754 kb on + strand at 953.754 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M1; plant location=P2 remove 950,535 + +2.1 950,535 + +0.2 950,536 - +1.7 950,536 - +0.8 950,536 - +1.1 950,536 - -0.2 950,544 - -0.4 950,544 - +0.2 950,741 + LU632_RS04860 0.26 +4.6 950,741 + LU632_RS04860 0.26 -0.7 950,742 - LU632_RS04860 0.26 +0.5 950,804 - LU632_RS04860 0.36 -1.0 950,836 + LU632_RS04860 0.41 +1.2 950,944 + LU632_RS04860 0.59 -0.6 950,971 + LU632_RS04860 0.63 -0.5 951,097 + LU632_RS04860 0.84 -0.8 951,097 + LU632_RS04860 0.84 +1.4 951,097 + LU632_RS04860 0.84 +0.1 951,255 + LU632_RS04865 0.26 -1.0 951,280 + LU632_RS04865 0.36 -0.5 951,281 - LU632_RS04865 0.37 +2.5 951,297 + LU632_RS04865 0.43 -0.2 951,301 + LU632_RS04865 0.45 +1.0 951,302 - LU632_RS04865 0.45 +1.0 951,302 - LU632_RS04865 0.45 -1.3 951,331 + LU632_RS04865 0.57 -1.6 951,346 - LU632_RS04865 0.63 -0.8 951,396 - LU632_RS04865 0.83 -0.2 951,396 - LU632_RS04865 0.83 -2.0 951,436 + +0.6 951,436 + -0.4 951,436 + +0.1 951,474 + -1.5 951,475 - +3.2 951,475 - +1.7 951,475 - -0.4 951,475 - -0.2 951,475 - -1.8 951,475 - +1.0 951,516 + +0.6 951,553 - -0.4 951,553 - -1.4 951,555 - -0.0 951,561 + +1.1 951,562 - -0.1 951,733 + LU632_RS04870 0.16 +1.1 951,744 + LU632_RS04870 0.17 +1.7 951,744 + LU632_RS04870 0.17 -1.2 951,745 - LU632_RS04870 0.17 +0.5 951,770 - LU632_RS04870 0.19 +0.9 951,810 + LU632_RS04870 0.23 -0.1 951,811 - LU632_RS04870 0.23 +1.3 951,918 + LU632_RS04870 0.31 -0.5 951,918 + LU632_RS04870 0.31 +1.1 951,918 + LU632_RS04870 0.31 -0.7 951,918 + LU632_RS04870 0.31 +0.4 951,919 - LU632_RS04870 0.31 +1.2 951,990 + LU632_RS04870 0.37 +2.8 952,011 + LU632_RS04870 0.39 -2.2 952,169 + LU632_RS04870 0.52 -0.4 952,170 - LU632_RS04870 0.52 +1.1 952,170 - LU632_RS04870 0.52 +2.0 952,277 + LU632_RS04870 0.60 +0.8 952,278 - LU632_RS04870 0.60 -0.4 952,348 + LU632_RS04870 0.66 +7.6 952,352 + LU632_RS04870 0.66 +1.0 952,352 + LU632_RS04870 0.66 -0.2 952,352 + LU632_RS04870 0.66 -0.2 952,352 + LU632_RS04870 0.66 +0.7 952,352 + LU632_RS04870 0.66 -1.4 952,352 + LU632_RS04870 0.66 -0.4 952,352 + LU632_RS04870 0.66 +0.5 952,353 - LU632_RS04870 0.67 +0.7 952,697 + -1.1 952,698 - +1.6 952,724 - -0.4 952,755 + +1.6 952,755 + -1.1 952,755 + -0.6 952,755 + -1.1 952,755 + -0.2 952,756 - +0.5 952,756 - -1.2 952,756 - -0.1 952,820 - +1.2 952,824 - -0.3 952,940 - -0.1 952,940 - -1.1 952,941 + +1.1 952,941 + +1.2 952,941 + +0.5 952,941 + -0.8 952,942 - +1.8 952,942 - -2.2 952,942 - +5.2 952,942 - -0.1 952,942 - +3.2 952,942 - -0.1 952,943 + +0.2 953,049 + LU632_RS04875 0.14 +0.3 953,090 + LU632_RS04875 0.19 -0.6 953,136 - LU632_RS04875 0.25 +0.7 953,189 + LU632_RS04875 0.32 +0.3 953,259 - LU632_RS04875 0.42 +0.5 953,259 - LU632_RS04875 0.42 -0.2 953,443 - LU632_RS04875 0.66 +0.5 953,476 - LU632_RS04875 0.70 +0.8 953,512 - LU632_RS04875 0.75 +1.3 953,529 + LU632_RS04875 0.77 -0.9 953,530 - LU632_RS04875 0.78 -0.4 953,530 - LU632_RS04875 0.78 +0.6 953,532 + LU632_RS04875 0.78 +3.8 953,532 + LU632_RS04875 0.78 -1.1 953,533 - LU632_RS04875 0.78 +2.7 953,533 - LU632_RS04875 0.78 -0.1 953,622 - LU632_RS04875 0.90 +0.3 953,722 + -0.7 953,722 + -0.5 953,754 + -0.5 953,754 + -0.7
Or see this region's nucleotide sequence