Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pfkA and fieF are separated by 180 nucleotides fieF and cpxP are separated by 148 nucleotides cpxP and cpxR are separated by 149 nucleotides
MCAODC_04330: pfkA - 6-phosphofructokinase, at 877,678 to 878,640
pfkA
MCAODC_04335: fieF - CDF family cation-efflux transporter FieF, at 878,821 to 879,723
fieF
MCAODC_04340: cpxP - cell-envelope stress modulator CpxP, at 879,872 to 880,372
cpxP
MCAODC_04345: cpxR - envelope stress response regulator transcription factor CpxR, at 880,522 to 881,220
cpxR
Position (kb) 878
879
880 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 878.443 kb on - strand, within pfkA at 878.482 kb on + strand, within pfkA at 878.526 kb on - strand, within pfkA at 878.536 kb on + strand, within pfkA at 878.727 kb on - strand at 878.727 kb on - strand at 878.727 kb on - strand at 878.730 kb on - strand at 878.731 kb on + strand at 878.732 kb on - strand at 878.784 kb on - strand at 878.814 kb on - strand at 878.814 kb on - strand at 878.822 kb on + strand at 878.823 kb on - strand at 878.823 kb on - strand at 878.832 kb on + strand at 878.833 kb on - strand at 878.833 kb on - strand at 878.850 kb on + strand at 878.850 kb on + strand at 878.851 kb on - strand at 878.851 kb on - strand at 878.880 kb on + strand at 878.914 kb on - strand, within fieF at 878.924 kb on - strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.940 kb on + strand, within fieF at 878.941 kb on - strand, within fieF at 878.941 kb on - strand, within fieF at 878.941 kb on - strand, within fieF at 878.941 kb on - strand, within fieF at 878.941 kb on - strand, within fieF at 878.941 kb on - strand, within fieF at 878.941 kb on - strand, within fieF at 879.095 kb on - strand, within fieF at 879.118 kb on + strand, within fieF at 879.119 kb on - strand, within fieF at 879.128 kb on + strand, within fieF at 879.147 kb on + strand, within fieF at 879.148 kb on - strand, within fieF at 879.150 kb on - strand, within fieF at 879.151 kb on + strand, within fieF at 879.151 kb on + strand, within fieF at 879.151 kb on + strand, within fieF at 879.151 kb on + strand, within fieF at 879.151 kb on + strand, within fieF at 879.152 kb on - strand, within fieF at 879.152 kb on - strand, within fieF at 879.152 kb on - strand, within fieF at 879.152 kb on - strand, within fieF at 879.152 kb on - strand, within fieF at 879.158 kb on + strand, within fieF at 879.159 kb on - strand, within fieF at 879.159 kb on - strand, within fieF at 879.207 kb on - strand, within fieF at 879.249 kb on + strand, within fieF at 879.250 kb on - strand, within fieF at 879.263 kb on + strand, within fieF at 879.263 kb on + strand, within fieF at 879.263 kb on + strand, within fieF at 879.263 kb on + strand, within fieF at 879.264 kb on - strand, within fieF at 879.264 kb on - strand, within fieF at 879.264 kb on - strand, within fieF at 879.264 kb on - strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.268 kb on + strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.269 kb on - strand, within fieF at 879.274 kb on - strand, within fieF at 879.350 kb on - strand, within fieF at 879.407 kb on - strand, within fieF at 879.439 kb on + strand, within fieF at 879.439 kb on + strand, within fieF at 879.439 kb on + strand, within fieF at 879.457 kb on - strand, within fieF at 879.457 kb on - strand, within fieF at 879.462 kb on + strand, within fieF at 879.462 kb on + strand, within fieF at 879.462 kb on + strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.463 kb on - strand, within fieF at 879.609 kb on + strand, within fieF at 879.610 kb on - strand, within fieF at 879.625 kb on - strand, within fieF at 879.625 kb on - strand, within fieF at 879.626 kb on + strand, within fieF at 879.626 kb on + strand, within fieF at 879.626 kb on + strand, within fieF at 879.626 kb on + strand, within fieF at 879.627 kb on - strand, within fieF at 879.655 kb on + strand at 879.724 kb on - strand at 879.727 kb on + strand at 879.728 kb on - strand at 879.728 kb on - strand at 879.749 kb on + strand at 879.750 kb on - strand at 879.750 kb on - strand at 879.750 kb on - strand at 879.752 kb on + strand at 879.752 kb on + strand at 879.753 kb on - strand at 879.753 kb on - strand at 879.753 kb on - strand at 879.753 kb on - strand at 879.753 kb on - strand at 879.755 kb on - strand at 879.755 kb on - strand at 879.782 kb on + strand at 879.850 kb on - strand at 879.892 kb on + strand at 879.892 kb on + strand at 879.892 kb on + strand at 879.893 kb on - strand at 879.893 kb on - strand at 879.893 kb on - strand at 879.902 kb on + strand at 879.902 kb on + strand at 879.902 kb on + strand at 879.902 kb on + strand at 879.903 kb on - strand at 879.903 kb on - strand at 880.011 kb on + strand, within cpxP at 880.012 kb on - strand, within cpxP at 880.012 kb on - strand, within cpxP at 880.012 kb on - strand, within cpxP at 880.153 kb on + strand, within cpxP at 880.186 kb on + strand, within cpxP at 880.187 kb on - strand, within cpxP at 880.187 kb on - strand, within cpxP at 880.187 kb on - strand, within cpxP at 880.187 kb on - strand, within cpxP at 880.187 kb on - strand, within cpxP at 880.226 kb on + strand, within cpxP at 880.227 kb on - strand, within cpxP at 880.227 kb on - strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.240 kb on + strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.241 kb on - strand, within cpxP at 880.252 kb on + strand, within cpxP at 880.252 kb on + strand, within cpxP at 880.320 kb on - strand, within cpxP at 880.360 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.364 kb on + strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.365 kb on - strand at 880.454 kb on - strand at 880.463 kb on + strand at 880.464 kb on - strand at 880.464 kb on - strand at 880.512 kb on + strand at 880.516 kb on + strand at 880.538 kb on + strand at 880.538 kb on + strand at 880.539 kb on - strand at 880.572 kb on - strand at 880.661 kb on + strand, within cpxR at 880.676 kb on + strand, within cpxR at 880.676 kb on + strand, within cpxR at 880.676 kb on + strand, within cpxR at 880.677 kb on - strand, within cpxR at 880.699 kb on - strand, within cpxR at 880.709 kb on + strand, within cpxR at 880.709 kb on + strand, within cpxR at 880.710 kb on - strand, within cpxR at 880.710 kb on - strand, within cpxR
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 878,443 - pfkA MCAODC_04330 0.79 -1.7 878,482 + pfkA MCAODC_04330 0.83 +0.9 878,526 - pfkA MCAODC_04330 0.88 +0.9 878,536 + pfkA MCAODC_04330 0.89 +1.9 878,727 - +0.9 878,727 - +2.1 878,727 - -1.7 878,730 - -1.0 878,731 + +0.4 878,732 - -2.5 878,784 - +0.6 878,814 - -1.4 878,814 - -1.6 878,822 + +2.5 878,823 - -1.8 878,823 - -1.1 878,832 + +1.6 878,833 - -0.7 878,833 - -1.0 878,850 + +1.3 878,850 + +1.6 878,851 - -3.7 878,851 - -1.9 878,880 + +2.1 878,914 - fieF MCAODC_04335 0.10 -2.7 878,924 - fieF MCAODC_04335 0.11 -2.9 878,940 + fieF MCAODC_04335 0.13 +0.6 878,940 + fieF MCAODC_04335 0.13 +3.1 878,940 + fieF MCAODC_04335 0.13 +1.8 878,940 + fieF MCAODC_04335 0.13 +1.5 878,940 + fieF MCAODC_04335 0.13 +1.2 878,940 + fieF MCAODC_04335 0.13 +0.9 878,940 + fieF MCAODC_04335 0.13 -0.1 878,940 + fieF MCAODC_04335 0.13 +0.3 878,940 + fieF MCAODC_04335 0.13 +1.0 878,941 - fieF MCAODC_04335 0.13 -4.2 878,941 - fieF MCAODC_04335 0.13 -2.6 878,941 - fieF MCAODC_04335 0.13 -2.6 878,941 - fieF MCAODC_04335 0.13 -1.1 878,941 - fieF MCAODC_04335 0.13 -0.7 878,941 - fieF MCAODC_04335 0.13 -2.8 878,941 - fieF MCAODC_04335 0.13 -0.7 879,095 - fieF MCAODC_04335 0.30 -1.7 879,118 + fieF MCAODC_04335 0.33 +1.9 879,119 - fieF MCAODC_04335 0.33 +2.5 879,128 + fieF MCAODC_04335 0.34 +2.9 879,147 + fieF MCAODC_04335 0.36 +0.9 879,148 - fieF MCAODC_04335 0.36 +0.0 879,150 - fieF MCAODC_04335 0.36 -1.1 879,151 + fieF MCAODC_04335 0.37 +0.2 879,151 + fieF MCAODC_04335 0.37 -0.7 879,151 + fieF MCAODC_04335 0.37 +2.1 879,151 + fieF MCAODC_04335 0.37 +1.4 879,151 + fieF MCAODC_04335 0.37 +2.1 879,152 - fieF MCAODC_04335 0.37 -2.5 879,152 - fieF MCAODC_04335 0.37 -1.7 879,152 - fieF MCAODC_04335 0.37 -1.1 879,152 - fieF MCAODC_04335 0.37 +0.2 879,152 - fieF MCAODC_04335 0.37 -0.9 879,158 + fieF MCAODC_04335 0.37 +2.3 879,159 - fieF MCAODC_04335 0.37 -2.8 879,159 - fieF MCAODC_04335 0.37 -1.1 879,207 - fieF MCAODC_04335 0.43 -1.1 879,249 + fieF MCAODC_04335 0.47 +2.2 879,250 - fieF MCAODC_04335 0.48 -2.2 879,263 + fieF MCAODC_04335 0.49 +0.4 879,263 + fieF MCAODC_04335 0.49 +2.2 879,263 + fieF MCAODC_04335 0.49 +1.0 879,263 + fieF MCAODC_04335 0.49 +1.9 879,264 - fieF MCAODC_04335 0.49 -0.6 879,264 - fieF MCAODC_04335 0.49 -2.3 879,264 - fieF MCAODC_04335 0.49 +0.1 879,264 - fieF MCAODC_04335 0.49 -0.5 879,268 + fieF MCAODC_04335 0.50 +3.2 879,268 + fieF MCAODC_04335 0.50 +0.6 879,268 + fieF MCAODC_04335 0.50 +3.9 879,268 + fieF MCAODC_04335 0.50 +1.5 879,268 + fieF MCAODC_04335 0.50 +1.8 879,268 + fieF MCAODC_04335 0.50 +1.1 879,268 + fieF MCAODC_04335 0.50 +2.1 879,268 + fieF MCAODC_04335 0.50 +1.3 879,268 + fieF MCAODC_04335 0.50 +0.9 879,268 + fieF MCAODC_04335 0.50 +0.6 879,268 + fieF MCAODC_04335 0.50 +1.0 879,268 + fieF MCAODC_04335 0.50 -0.1 879,268 + fieF MCAODC_04335 0.50 +0.6 879,268 + fieF MCAODC_04335 0.50 +0.4 879,268 + fieF MCAODC_04335 0.50 +0.8 879,268 + fieF MCAODC_04335 0.50 +1.1 879,268 + fieF MCAODC_04335 0.50 +1.8 879,268 + fieF MCAODC_04335 0.50 +1.9 879,268 + fieF MCAODC_04335 0.50 +2.3 879,269 - fieF MCAODC_04335 0.50 +0.8 879,269 - fieF MCAODC_04335 0.50 -2.6 879,269 - fieF MCAODC_04335 0.50 +1.1 879,269 - fieF MCAODC_04335 0.50 -0.9 879,269 - fieF MCAODC_04335 0.50 -1.4 879,269 - fieF MCAODC_04335 0.50 +0.5 879,269 - fieF MCAODC_04335 0.50 +0.5 879,269 - fieF MCAODC_04335 0.50 -1.7 879,269 - fieF MCAODC_04335 0.50 -0.6 879,269 - fieF MCAODC_04335 0.50 -0.1 879,269 - fieF MCAODC_04335 0.50 +0.9 879,269 - fieF MCAODC_04335 0.50 -1.7 879,269 - fieF MCAODC_04335 0.50 -0.9 879,269 - fieF MCAODC_04335 0.50 -0.9 879,274 - fieF MCAODC_04335 0.50 -1.0 879,350 - fieF MCAODC_04335 0.59 -0.2 879,407 - fieF MCAODC_04335 0.65 -2.0 879,439 + fieF MCAODC_04335 0.68 -3.2 879,439 + fieF MCAODC_04335 0.68 -0.7 879,439 + fieF MCAODC_04335 0.68 +1.7 879,457 - fieF MCAODC_04335 0.70 -1.6 879,457 - fieF MCAODC_04335 0.70 -1.1 879,462 + fieF MCAODC_04335 0.71 +0.3 879,462 + fieF MCAODC_04335 0.71 -0.7 879,462 + fieF MCAODC_04335 0.71 +0.4 879,463 - fieF MCAODC_04335 0.71 -0.4 879,463 - fieF MCAODC_04335 0.71 +1.0 879,463 - fieF MCAODC_04335 0.71 -0.6 879,463 - fieF MCAODC_04335 0.71 -0.9 879,463 - fieF MCAODC_04335 0.71 -1.1 879,463 - fieF MCAODC_04335 0.71 -2.1 879,463 - fieF MCAODC_04335 0.71 -2.3 879,463 - fieF MCAODC_04335 0.71 +0.1 879,609 + fieF MCAODC_04335 0.87 -0.1 879,610 - fieF MCAODC_04335 0.87 -0.1 879,625 - fieF MCAODC_04335 0.89 +0.9 879,625 - fieF MCAODC_04335 0.89 -0.4 879,626 + fieF MCAODC_04335 0.89 +0.9 879,626 + fieF MCAODC_04335 0.89 -0.9 879,626 + fieF MCAODC_04335 0.89 +3.7 879,626 + fieF MCAODC_04335 0.89 +0.9 879,627 - fieF MCAODC_04335 0.89 -0.5 879,655 + +1.3 879,724 - -1.1 879,727 + +0.5 879,728 - -2.4 879,728 - -2.7 879,749 + +1.3 879,750 - -2.9 879,750 - -2.8 879,750 - -3.3 879,752 + -0.2 879,752 + +0.7 879,753 - -4.1 879,753 - -3.4 879,753 - -1.9 879,753 - -2.2 879,753 - -2.3 879,755 - -3.0 879,755 - -2.0 879,782 + +2.9 879,850 - -0.1 879,892 + +0.0 879,892 + +1.9 879,892 + -1.6 879,893 - +0.6 879,893 - -3.5 879,893 - +1.4 879,902 + -0.3 879,902 + -2.0 879,902 + -0.4 879,902 + -0.1 879,903 - +1.5 879,903 - -1.6 880,011 + cpxP MCAODC_04340 0.28 +0.2 880,012 - cpxP MCAODC_04340 0.28 -0.7 880,012 - cpxP MCAODC_04340 0.28 +0.3 880,012 - cpxP MCAODC_04340 0.28 +0.1 880,153 + cpxP MCAODC_04340 0.56 +1.4 880,186 + cpxP MCAODC_04340 0.63 -0.5 880,187 - cpxP MCAODC_04340 0.63 +0.1 880,187 - cpxP MCAODC_04340 0.63 +0.6 880,187 - cpxP MCAODC_04340 0.63 +2.7 880,187 - cpxP MCAODC_04340 0.63 -1.1 880,187 - cpxP MCAODC_04340 0.63 -0.4 880,226 + cpxP MCAODC_04340 0.71 +0.8 880,227 - cpxP MCAODC_04340 0.71 +0.1 880,227 - cpxP MCAODC_04340 0.71 -0.8 880,240 + cpxP MCAODC_04340 0.73 -0.2 880,240 + cpxP MCAODC_04340 0.73 -0.2 880,240 + cpxP MCAODC_04340 0.73 -0.0 880,240 + cpxP MCAODC_04340 0.73 -0.5 880,240 + cpxP MCAODC_04340 0.73 -0.3 880,241 - cpxP MCAODC_04340 0.74 +0.0 880,241 - cpxP MCAODC_04340 0.74 -2.4 880,241 - cpxP MCAODC_04340 0.74 -0.8 880,241 - cpxP MCAODC_04340 0.74 -3.6 880,241 - cpxP MCAODC_04340 0.74 -0.1 880,241 - cpxP MCAODC_04340 0.74 +0.9 880,252 + cpxP MCAODC_04340 0.76 +1.9 880,252 + cpxP MCAODC_04340 0.76 -0.1 880,320 - cpxP MCAODC_04340 0.89 +1.5 880,360 + +0.0 880,364 + +1.9 880,364 + +1.3 880,364 + +0.6 880,364 + -0.7 880,364 + -0.8 880,364 + +0.2 880,364 + +0.7 880,364 + +0.4 880,365 - +1.2 880,365 - +0.2 880,365 - +0.2 880,365 - -0.4 880,365 - -0.8 880,365 - +0.4 880,365 - -0.4 880,365 - +0.6 880,365 - -0.4 880,365 - +0.9 880,365 - +0.9 880,365 - +1.9 880,365 - +0.7 880,454 - +0.5 880,463 + +2.2 880,464 - +1.6 880,464 - -0.1 880,512 + -1.3 880,516 + +0.0 880,538 + -0.0 880,538 + +2.4 880,539 - +0.6 880,572 - -0.4 880,661 + cpxR MCAODC_04345 0.20 -1.7 880,676 + cpxR MCAODC_04345 0.22 -2.1 880,676 + cpxR MCAODC_04345 0.22 -0.1 880,676 + cpxR MCAODC_04345 0.22 +0.3 880,677 - cpxR MCAODC_04345 0.22 +0.9 880,699 - cpxR MCAODC_04345 0.25 -2.4 880,709 + cpxR MCAODC_04345 0.27 +0.9 880,709 + cpxR MCAODC_04345 0.27 +0.3 880,710 - cpxR MCAODC_04345 0.27 +0.9 880,710 - cpxR MCAODC_04345 0.27 +4.2
Or see this region's nucleotide sequence