Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lexA and dgkA are separated by 109 nucleotides dgkA and plsB are separated by 170 nucleotides plsB and ubiA are separated by 154 nucleotides
MCAODC_03565: lexA - transcriptional repressor LexA, at 714,006 to 714,614
lexA
MCAODC_03570: dgkA - diacylglycerol kinase, at 714,724 to 715,092
dgkA
MCAODC_03575: plsB - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 715,263 to 717,686
plsB
MCAODC_03580: ubiA - 4-hydroxybenzoate octaprenyltransferase, at 717,841 to 718,713
ubiA
Position (kb) 715
716
717
718 Strain fitness (log2 ratio) -2
-1
0
1
2 at 714.631 kb on - strand at 714.633 kb on - strand at 714.635 kb on - strand at 714.635 kb on - strand at 714.654 kb on - strand at 714.655 kb on + strand at 714.656 kb on - strand at 714.681 kb on + strand at 714.681 kb on + strand at 714.682 kb on - strand at 714.694 kb on - strand at 714.759 kb on + strand at 714.759 kb on + strand at 714.759 kb on + strand at 714.759 kb on + strand at 714.804 kb on + strand, within dgkA at 714.810 kb on + strand, within dgkA at 714.833 kb on + strand, within dgkA at 714.834 kb on - strand, within dgkA at 714.915 kb on + strand, within dgkA at 714.977 kb on - strand, within dgkA at 714.982 kb on + strand, within dgkA at 714.982 kb on + strand, within dgkA at 715.080 kb on + strand at 715.080 kb on + strand at 715.080 kb on + strand at 715.081 kb on - strand at 715.081 kb on - strand at 715.083 kb on + strand at 715.084 kb on - strand at 715.084 kb on - strand at 715.084 kb on - strand at 715.107 kb on + strand at 715.107 kb on + strand at 715.107 kb on + strand at 715.107 kb on + strand at 715.107 kb on + strand at 715.108 kb on - strand at 715.108 kb on - strand at 715.124 kb on + strand at 715.124 kb on + strand at 715.132 kb on + strand at 715.132 kb on + strand at 715.138 kb on + strand at 715.139 kb on - strand at 715.188 kb on - strand at 715.237 kb on + strand at 715.237 kb on + strand at 715.237 kb on + strand at 717.391 kb on - strand, within plsB at 717.635 kb on + strand at 717.635 kb on + strand at 717.635 kb on + strand at 717.636 kb on - strand at 717.735 kb on + strand at 717.735 kb on + strand at 717.735 kb on + strand at 717.770 kb on + strand at 717.834 kb on + strand at 717.854 kb on + strand at 717.855 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 714,631 - -0.1 714,633 - -2.0 714,635 - -0.4 714,635 - +1.1 714,654 - +0.6 714,655 + -0.2 714,656 - -0.6 714,681 + -1.4 714,681 + -1.5 714,682 - -0.0 714,694 - -0.4 714,759 + -0.2 714,759 + -2.2 714,759 + +2.0 714,759 + +0.8 714,804 + dgkA MCAODC_03570 0.22 -0.6 714,810 + dgkA MCAODC_03570 0.23 -2.5 714,833 + dgkA MCAODC_03570 0.30 -0.9 714,834 - dgkA MCAODC_03570 0.30 -0.6 714,915 + dgkA MCAODC_03570 0.52 -2.0 714,977 - dgkA MCAODC_03570 0.69 -0.3 714,982 + dgkA MCAODC_03570 0.70 +0.6 714,982 + dgkA MCAODC_03570 0.70 -0.3 715,080 + -0.6 715,080 + -0.5 715,080 + -0.1 715,081 - +1.2 715,081 - +0.5 715,083 + -0.2 715,084 - +0.3 715,084 - +0.5 715,084 - +1.0 715,107 + +0.2 715,107 + +1.3 715,107 + -0.5 715,107 + -0.4 715,107 + -0.6 715,108 - -0.9 715,108 - +0.5 715,124 + +0.3 715,124 + +0.5 715,132 + -0.8 715,132 + -0.0 715,138 + +2.2 715,139 - +0.6 715,188 - -1.0 715,237 + +0.7 715,237 + -0.0 715,237 + +2.3 717,391 - plsB MCAODC_03575 0.88 +1.4 717,635 + -1.6 717,635 + -0.5 717,635 + +0.6 717,636 - +1.5 717,735 + +0.1 717,735 + -0.1 717,735 + +0.1 717,770 + -0.6 717,834 + +0.8 717,854 + +0.3 717,855 - +0.2
Or see this region's nucleotide sequence