Strain Fitness in Erwinia amylovora T8 around OLJFJH_11165

Experiment: Matrix:KB soft agar;Phage:PBS;Temp:28;Samp:32-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_11155 and OLJFJH_11160 overlap by 44 nucleotidesOLJFJH_11160 and OLJFJH_11165 are separated by 9 nucleotidesOLJFJH_11165 and OLJFJH_11170 are separated by 89 nucleotidesOLJFJH_11170 and OLJFJH_11175 are separated by 31 nucleotides OLJFJH_11155: OLJFJH_11155 - chorismate synthase, at 2,321,853 to 2,322,938 _11155 OLJFJH_11160: OLJFJH_11160 - penicillin-insensitive murein endopeptidase, at 2,322,895 to 2,323,761 _11160 OLJFJH_11165: OLJFJH_11165 - Sulfite exporter TauE/SafE, at 2,323,771 to 2,324,568 _11165 OLJFJH_11170: OLJFJH_11170 - elongation factor P hydroxylase, at 2,324,658 to 2,325,206 _11170 OLJFJH_11175: OLJFJH_11175 - Uncharacterized protein YfcL, at 2,325,238 to 2,325,519 _11175 Position (kb) 2323 2324 2325Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2322.997 kb on - strand, within OLJFJH_11160at 2323.109 kb on - strand, within OLJFJH_11160at 2323.296 kb on + strand, within OLJFJH_11160at 2323.297 kb on - strand, within OLJFJH_11160at 2323.572 kb on - strand, within OLJFJH_11160at 2323.760 kb on - strandat 2323.975 kb on - strand, within OLJFJH_11165at 2323.983 kb on + strand, within OLJFJH_11165at 2323.998 kb on - strand, within OLJFJH_11165at 2324.016 kb on + strand, within OLJFJH_11165at 2324.017 kb on - strand, within OLJFJH_11165at 2324.017 kb on - strand, within OLJFJH_11165at 2324.126 kb on - strand, within OLJFJH_11165at 2324.126 kb on - strand, within OLJFJH_11165at 2324.221 kb on + strand, within OLJFJH_11165at 2324.258 kb on - strand, within OLJFJH_11165at 2324.290 kb on - strand, within OLJFJH_11165at 2324.361 kb on + strand, within OLJFJH_11165at 2324.454 kb on + strand, within OLJFJH_11165at 2324.488 kb on - strand, within OLJFJH_11165at 2324.488 kb on - strand, within OLJFJH_11165at 2324.522 kb on - strandat 2324.590 kb on + strandat 2324.590 kb on + strandat 2324.657 kb on + strandat 2324.676 kb on + strandat 2324.760 kb on + strand, within OLJFJH_11170at 2324.760 kb on + strand, within OLJFJH_11170at 2324.761 kb on - strand, within OLJFJH_11170at 2324.761 kb on - strand, within OLJFJH_11170at 2324.814 kb on + strand, within OLJFJH_11170at 2324.817 kb on + strand, within OLJFJH_11170at 2324.818 kb on - strand, within OLJFJH_11170at 2324.839 kb on + strand, within OLJFJH_11170at 2325.010 kb on + strand, within OLJFJH_11170at 2325.010 kb on + strand, within OLJFJH_11170at 2325.011 kb on - strand, within OLJFJH_11170at 2325.011 kb on - strand, within OLJFJH_11170at 2325.011 kb on - strand, within OLJFJH_11170at 2325.072 kb on + strand, within OLJFJH_11170at 2325.073 kb on - strand, within OLJFJH_11170at 2325.091 kb on - strand, within OLJFJH_11170at 2325.091 kb on - strand, within OLJFJH_11170at 2325.205 kb on - strandat 2325.238 kb on - strandat 2325.325 kb on + strand, within OLJFJH_11175at 2325.341 kb on + strand, within OLJFJH_11175at 2325.381 kb on + strand, within OLJFJH_11175at 2325.517 kb on + strandat 2325.518 kb on - strandat 2325.518 kb on - strandat 2325.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:PBS;Temp:28;Samp:32-2
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2,322,997 - OLJFJH_11160 0.12 -1.9
2,323,109 - OLJFJH_11160 0.25 -2.3
2,323,296 + OLJFJH_11160 0.46 +0.1
2,323,297 - OLJFJH_11160 0.46 -0.7
2,323,572 - OLJFJH_11160 0.78 -2.7
2,323,760 - -2.5
2,323,975 - OLJFJH_11165 0.26 -1.8
2,323,983 + OLJFJH_11165 0.27 -1.8
2,323,998 - OLJFJH_11165 0.28 -1.2
2,324,016 + OLJFJH_11165 0.31 -4.5
2,324,017 - OLJFJH_11165 0.31 -2.0
2,324,017 - OLJFJH_11165 0.31 -3.3
2,324,126 - OLJFJH_11165 0.44 -3.6
2,324,126 - OLJFJH_11165 0.44 -1.1
2,324,221 + OLJFJH_11165 0.56 -2.9
2,324,258 - OLJFJH_11165 0.61 -3.3
2,324,290 - OLJFJH_11165 0.65 -1.8
2,324,361 + OLJFJH_11165 0.74 -1.5
2,324,454 + OLJFJH_11165 0.86 -4.1
2,324,488 - OLJFJH_11165 0.90 -2.9
2,324,488 - OLJFJH_11165 0.90 -3.4
2,324,522 - -3.4
2,324,590 + +0.3
2,324,590 + -0.1
2,324,657 + -0.3
2,324,676 + -1.0
2,324,760 + OLJFJH_11170 0.19 +1.0
2,324,760 + OLJFJH_11170 0.19 -0.6
2,324,761 - OLJFJH_11170 0.19 -0.3
2,324,761 - OLJFJH_11170 0.19 +0.1
2,324,814 + OLJFJH_11170 0.28 -0.1
2,324,817 + OLJFJH_11170 0.29 -0.3
2,324,818 - OLJFJH_11170 0.29 -0.8
2,324,839 + OLJFJH_11170 0.33 +0.7
2,325,010 + OLJFJH_11170 0.64 -0.2
2,325,010 + OLJFJH_11170 0.64 -0.3
2,325,011 - OLJFJH_11170 0.64 -0.0
2,325,011 - OLJFJH_11170 0.64 -0.2
2,325,011 - OLJFJH_11170 0.64 +0.1
2,325,072 + OLJFJH_11170 0.75 -0.0
2,325,073 - OLJFJH_11170 0.76 -1.3
2,325,091 - OLJFJH_11170 0.79 -0.6
2,325,091 - OLJFJH_11170 0.79 -0.8
2,325,205 - +0.8
2,325,238 - -2.1
2,325,325 + OLJFJH_11175 0.31 -0.1
2,325,341 + OLJFJH_11175 0.37 -0.5
2,325,381 + OLJFJH_11175 0.51 -0.8
2,325,517 + -0.1
2,325,518 - -0.4
2,325,518 - +0.2
2,325,518 - +1.9

Or see this region's nucleotide sequence