Strain Fitness in Pseudomonas simiae WCS417 around PS417_28215

Experiment: Urea (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_28210 and PS417_28215 are separated by 11 nucleotidesPS417_28215 and PS417_28220 are separated by 196 nucleotides PS417_28210: PS417_28210 - pyruvate carboxylase subunit B, at 6,089,934 to 6,091,742 _28210 PS417_28215: PS417_28215 - pyruvate carboxylase subunit A, at 6,091,754 to 6,093,169 _28215 PS417_28220: PS417_28220 - LysR family transcriptional regulator, at 6,093,366 to 6,094,340 _28220 Position (kb) 6091 6092 6093 6094Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6091.307 kb on - strand, within PS417_28210at 6091.749 kb on - strandat 6091.868 kb on - strandat 6093.387 kb on - strandat 6093.439 kb on - strandat 6093.439 kb on - strandat 6093.949 kb on - strand, within PS417_28220at 6093.949 kb on - strand, within PS417_28220at 6094.075 kb on + strand, within PS417_28220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
remove
6,091,307 - PS417_28210 0.76 -0.3
6,091,749 - -3.4
6,091,868 - -1.6
6,093,387 - -2.2
6,093,439 - -3.5
6,093,439 - -3.1
6,093,949 - PS417_28220 0.60 -3.5
6,093,949 - PS417_28220 0.60 -4.4
6,094,075 + PS417_28220 0.73 -2.2

Or see this region's nucleotide sequence