Strain Fitness in Pseudomonas simiae WCS417 around PS417_01980

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01975 and PS417_01980 are separated by 4 nucleotidesPS417_01980 and PS417_01985 are separated by 125 nucleotides PS417_01975: PS417_01975 - pilus assembly protein PilQ, at 438,423 to 439,748 _01975 PS417_01980: PS417_01980 - shikimate kinase, at 439,753 to 440,271 _01980 PS417_01985: PS417_01985 - 3-dehydroquinate synthase, at 440,397 to 441,497 _01985 Position (kb) 439 440 441Strain fitness (log2 ratio) -1 0 1 2at 438.816 kb on + strand, within PS417_01975at 438.816 kb on + strand, within PS417_01975at 438.816 kb on + strand, within PS417_01975at 439.209 kb on + strand, within PS417_01975at 439.210 kb on - strand, within PS417_01975at 439.482 kb on + strand, within PS417_01975at 439.483 kb on - strand, within PS417_01975at 439.540 kb on + strand, within PS417_01975at 439.606 kb on + strand, within PS417_01975at 439.611 kb on - strand, within PS417_01975at 439.611 kb on - strand, within PS417_01975at 439.611 kb on - strand, within PS417_01975at 439.637 kb on + strandat 439.715 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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438,816 + PS417_01975 0.30 +0.9
438,816 + PS417_01975 0.30 -0.2
438,816 + PS417_01975 0.30 -0.1
439,209 + PS417_01975 0.59 +0.2
439,210 - PS417_01975 0.59 -0.1
439,482 + PS417_01975 0.80 +0.6
439,483 - PS417_01975 0.80 +1.9
439,540 + PS417_01975 0.84 +0.3
439,606 + PS417_01975 0.89 +0.3
439,611 - PS417_01975 0.90 -0.9
439,611 - PS417_01975 0.90 -0.4
439,611 - PS417_01975 0.90 -1.0
439,637 + +1.3
439,715 + +0.4

Or see this region's nucleotide sequence