Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01625 and PS417_01630 overlap by 2 nucleotides PS417_01630 and PS417_01635 are separated by 532 nucleotides PS417_01635 and PS417_01640 overlap by 4 nucleotides
PS417_01625: PS417_01625 - rRNA methylase, at 356,742 to 357,197
_01625
PS417_01630: PS417_01630 - hypothetical protein, at 357,196 to 357,636
_01630
PS417_01635: PS417_01635 - nitrogen regulation protein NR(I), at 358,169 to 359,605
_01635
PS417_01640: PS417_01640 - histidine kinase, at 359,602 to 360,687
_01640
Position (kb) 358
359
360 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 357.261 kb on + strand, within PS417_01630 at 357.262 kb on - strand, within PS417_01630 at 357.818 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 358.085 kb on + strand at 358.085 kb on + strand at 358.112 kb on + strand at 358.113 kb on - strand at 358.114 kb on + strand at 358.114 kb on + strand at 358.115 kb on - strand at 358.115 kb on - strand at 358.115 kb on - strand at 358.244 kb on - strand at 358.563 kb on + strand, within PS417_01635 at 358.563 kb on + strand, within PS417_01635 at 358.781 kb on + strand, within PS417_01635 at 358.781 kb on + strand, within PS417_01635 at 358.782 kb on - strand, within PS417_01635 at 359.302 kb on - strand, within PS417_01635 at 359.486 kb on + strand at 359.486 kb on + strand at 359.486 kb on + strand at 359.487 kb on - strand at 359.561 kb on - strand at 359.938 kb on - strand, within PS417_01640 at 359.938 kb on - strand, within PS417_01640 at 359.941 kb on + strand, within PS417_01640 at 359.941 kb on + strand, within PS417_01640 at 359.941 kb on + strand, within PS417_01640 at 359.942 kb on - strand, within PS417_01640 at 359.942 kb on - strand, within PS417_01640 at 360.408 kb on - strand, within PS417_01640 at 360.599 kb on + strand at 360.599 kb on + strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 357,261 + PS417_01630 0.15 -0.1 357,262 - PS417_01630 0.15 -1.2 357,818 - -0.3 357,843 - +0.5 357,843 - -0.8 357,843 - +0.4 357,843 - -0.2 357,843 - -0.5 357,843 - -1.1 358,085 + -0.1 358,085 + +0.6 358,112 + +0.3 358,113 - +0.2 358,114 + +1.3 358,114 + +1.2 358,115 - +0.4 358,115 - +1.8 358,115 - +2.0 358,244 - -2.8 358,563 + PS417_01635 0.27 -7.1 358,563 + PS417_01635 0.27 -6.0 358,781 + PS417_01635 0.43 -3.0 358,781 + PS417_01635 0.43 -2.0 358,782 - PS417_01635 0.43 -3.2 359,302 - PS417_01635 0.79 -5.7 359,486 + -2.1 359,486 + -5.9 359,486 + -6.4 359,487 - -5.6 359,561 - -4.1 359,938 - PS417_01640 0.31 -6.6 359,938 - PS417_01640 0.31 -4.3 359,941 + PS417_01640 0.31 -2.3 359,941 + PS417_01640 0.31 +0.3 359,941 + PS417_01640 0.31 +0.0 359,942 - PS417_01640 0.31 -0.4 359,942 - PS417_01640 0.31 -4.5 360,408 - PS417_01640 0.74 -4.0 360,599 + -6.1 360,599 + -2.6 360,600 - -2.3 360,600 - -5.2 360,600 - -0.4
Or see this region's nucleotide sequence