Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12555 and PS417_12560 overlap by 4 nucleotides PS417_12560 and PS417_12565 are separated by 45 nucleotides PS417_12565 and PS417_12570 overlap by 8 nucleotides
PS417_12555: PS417_12555 - phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) , at 2,731,682 to 2,732,659
_12555
PS417_12560: PS417_12560 - MFS transporter, at 2,732,656 to 2,733,948
_12560
PS417_12565: PS417_12565 - 2-dehydro-3-deoxygluconokinase, at 2,733,994 to 2,734,935
_12565
PS417_12570: PS417_12570 - AP endonuclease, at 2,734,928 to 2,735,710
_12570
Position (kb)
2732
2733
2734 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2732.409 kb on + strand, within PS417_12555 at 2732.410 kb on - strand, within PS417_12555 at 2732.421 kb on + strand at 2732.422 kb on - strand, within PS417_12555 at 2732.422 kb on - strand, within PS417_12555 at 2732.510 kb on + strand, within PS417_12555 at 2732.510 kb on + strand, within PS417_12555 at 2732.511 kb on - strand, within PS417_12555 at 2732.511 kb on - strand, within PS417_12555 at 2732.511 kb on - strand, within PS417_12555 at 2732.637 kb on + strand at 2732.669 kb on - strand at 2732.799 kb on + strand, within PS417_12560 at 2732.969 kb on + strand, within PS417_12560 at 2732.969 kb on + strand, within PS417_12560 at 2733.002 kb on + strand, within PS417_12560 at 2733.003 kb on - strand, within PS417_12560 at 2733.003 kb on - strand, within PS417_12560 at 2733.003 kb on - strand, within PS417_12560 at 2733.003 kb on - strand, within PS417_12560 at 2733.119 kb on + strand, within PS417_12560 at 2733.399 kb on + strand, within PS417_12560 at 2733.435 kb on + strand, within PS417_12560 at 2733.436 kb on - strand, within PS417_12560 at 2733.436 kb on - strand, within PS417_12560 at 2733.470 kb on + strand, within PS417_12560 at 2733.478 kb on + strand, within PS417_12560 at 2733.479 kb on - strand, within PS417_12560 at 2733.572 kb on + strand, within PS417_12560 at 2733.572 kb on + strand, within PS417_12560 at 2733.641 kb on + strand, within PS417_12560 at 2733.734 kb on + strand, within PS417_12560 at 2733.885 kb on - strand at 2733.885 kb on - strand at 2733.911 kb on + strand at 2733.911 kb on + strand at 2733.912 kb on - strand at 2733.912 kb on - strand at 2733.988 kb on - strand at 2733.988 kb on - strand at 2734.094 kb on - strand, within PS417_12565 at 2734.286 kb on + strand, within PS417_12565 at 2734.287 kb on - strand, within PS417_12565 at 2734.935 kb on + strand at 2734.935 kb on + strand at 2734.935 kb on + strand at 2734.935 kb on + strand at 2734.936 kb on - strand at 2734.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 2,732,409 + PS417_12555 0.74 -1.8 2,732,410 - PS417_12555 0.74 -2.1 2,732,421 + -1.0 2,732,422 - PS417_12555 0.76 -2.1 2,732,422 - PS417_12555 0.76 -2.1 2,732,510 + PS417_12555 0.85 -2.0 2,732,510 + PS417_12555 0.85 -2.6 2,732,511 - PS417_12555 0.85 -0.4 2,732,511 - PS417_12555 0.85 -3.6 2,732,511 - PS417_12555 0.85 -1.5 2,732,637 + -1.4 2,732,669 - +0.3 2,732,799 + PS417_12560 0.11 -1.1 2,732,969 + PS417_12560 0.24 -1.1 2,732,969 + PS417_12560 0.24 -2.3 2,733,002 + PS417_12560 0.27 -1.0 2,733,003 - PS417_12560 0.27 -3.6 2,733,003 - PS417_12560 0.27 -2.2 2,733,003 - PS417_12560 0.27 -0.7 2,733,003 - PS417_12560 0.27 -1.2 2,733,119 + PS417_12560 0.36 -1.0 2,733,399 + PS417_12560 0.57 -0.2 2,733,435 + PS417_12560 0.60 -1.5 2,733,436 - PS417_12560 0.60 -0.5 2,733,436 - PS417_12560 0.60 -1.0 2,733,470 + PS417_12560 0.63 -1.5 2,733,478 + PS417_12560 0.64 -1.6 2,733,479 - PS417_12560 0.64 -1.6 2,733,572 + PS417_12560 0.71 -0.7 2,733,572 + PS417_12560 0.71 -1.3 2,733,641 + PS417_12560 0.76 -0.4 2,733,734 + PS417_12560 0.83 -3.6 2,733,885 - -1.2 2,733,885 - -1.0 2,733,911 + -1.8 2,733,911 + +0.5 2,733,912 - -1.6 2,733,912 - -1.6 2,733,988 - -0.7 2,733,988 - -0.8 2,734,094 - PS417_12565 0.11 -1.2 2,734,286 + PS417_12565 0.31 -2.8 2,734,287 - PS417_12565 0.31 -0.8 2,734,935 + -0.4 2,734,935 + -0.9 2,734,935 + -1.4 2,734,935 + +0.3 2,734,936 - -0.5 2,734,936 - -1.1
Or see this region's nucleotide sequence